This is a package which reproduces all IHW paper figures (as well as some additional figures for presentations etc.). The package is available on Bioconductor.
You can install the package as follows:
# install FDRreg (at specific version used for simulations here)
install_github(repo= "jgscott/FDRreg", subdir="R_pkg/", ref = "a63cebae6faecb1fb0ebee634195296f39faa11b")
# Use Bioconductor to install IHWpaper
if (!requireNamespace("BiocManager", quietly=TRUE))
install.packages("BiocManager")
BiocManager::install("IHWpaper")
Afterwards you can view the pre-built vignettes or rebuild them yourself.
Notice that the vignettes load binary .Rds files which are stored in inst/real_data_examples/result_files
and inst/simulations_benchmarks/result_files. These have been generated by longer lasting jobs, the code for which can be found in inst/real_data_examples and inst/simulation_benchmarks.