GeneMarkS-2 #25
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GeneMarkS-2 #25
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nigyta
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Feb 9, 2020
As per the pull request #25 and the issue #20, command-line options to enable GeneMarkS2, Diamond, RNAmmer have been added. See [FAQ](docs/FAQ.md) for more details. ``` --aligner STR Aligner to use [ghostx(=default)|blastp|diamond] --use_genemarks2 STR Use GeneMarkS2 to predict CDS instead of MGA. [auto|bact|arch] --use_rnammer STR Use RNAmmer to predict rRNA instead of Barrnap. [bact|arch] ``` Note that GeneMarkS2, Diamond, RNAmmer are not bundled in the software package. If you want to use them, please install them by yourself. Thank @AaronRuben for the PR for GeneMarkS2!
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PR is closed as the source codes have been merged according as per #26 |
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Hi,
I just followed the style you used to for the incorporation of Prodigal.
Probably you will need to change the path for the gms2.pl executable. I didn't give any since I am not aware of licensing etc or how do you want solve this respectively.
Thank you very much!
Best,
Aaron