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[ENH] Large refactoring of anatomical workflow #219

Merged
merged 18 commits into from Oct 20, 2016
Merged

[ENH] Large refactoring of anatomical workflow #219

merged 18 commits into from Oct 20, 2016

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oesteban
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Includes:

@oesteban
reorganizing workflows
bdf5615
@oesteban
separate IQMs and reports workflows
749488b
@oesteban
fix error on input name
6274b05
@oesteban
fix missing connections to workflow
0e9f6ea
@oesteban
add PlotContours interface
ab1f050
@oesteban
Several additions in the anatomical refactoring
5e2051d 
- Finished up separation of workflows (both calculation of IQMs and reporting).
  This leaves nipreps#205 very close to be achieved in anatomical MRIQC.
- Added --verbose-reports (nipreps#204, close after it is also used in the fMRI workflow).
@oesteban
fix art_qi2 tests
126985f
@oesteban
enable --verbose-reports when --testing
77fa625
@oesteban
break lines too long in mriqc_run
f96eb39
@oesteban
composing SVG files
bb4768b
@oesteban
migrate individual reports to svg+html
5db4719
@oesteban
generate verbose reports in circleci
3dffa29
@oesteban
update mni template. close nipreps#218
6adf7ea
@oesteban
update niworkflows version, and head mask source
9109e8d
@oesteban
compute overlap between MNI tpms and estimated ones
3f62758
@oesteban
fix FBER masks, close nipreps#217
fff9890
@oesteban
fix error in fber function, pylint fixes
e0798f4
@oesteban
remove unnecessary import
5807c2c
@oesteban oesteban merged commit cf8aa39 into nipreps:master Oct 20, 2016
@oesteban oesteban deleted the enh/RefactorAnatomical branch October 20, 2016 01:18
@oesteban oesteban mentioned this pull request Oct 20, 2016
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@oesteban