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[ENH] Large refactoring of anatomical workflow #219

Merged
merged 18 commits into from Oct 20, 2016
Merged

[ENH] Large refactoring of anatomical workflow #219

merged 18 commits into from Oct 20, 2016

Commits on Oct 17, 2016

  1. reorganizing workflows

    @oesteban
    oesteban committed Oct 17, 2016
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  2. separate IQMs and reports workflows

    @oesteban
    oesteban committed Oct 17, 2016
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  3. fix error on input name

    @oesteban
    oesteban committed Oct 17, 2016
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  4. fix missing connections to workflow

    @oesteban
    oesteban committed Oct 17, 2016
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  5. add PlotContours interface

    @oesteban
    oesteban committed Oct 17, 2016
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  6. Several additions in the anatomical refactoring 

    - Finished up separation of workflows (both calculation of IQMs and reporting).
  This leaves nipreps#205 very close to be achieved in anatomical MRIQC.
- Added --verbose-reports (nipreps#204, close after it is also used in the fMRI workflow).
    @oesteban
    oesteban committed Oct 17, 2016
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  7. fix art_qi2 tests

    @oesteban
    oesteban committed Oct 17, 2016
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  8. enable --verbose-reports when --testing

    @oesteban
    oesteban committed Oct 17, 2016
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  9. break lines too long in mriqc_run

    @oesteban
    oesteban committed Oct 17, 2016
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  10. composing SVG files

    @oesteban
    oesteban committed Oct 17, 2016
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Commits on Oct 19, 2016

  1. migrate individual reports to svg+html

    @oesteban
    oesteban committed Oct 19, 2016
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  2. generate verbose reports in circleci

    @oesteban
    oesteban committed Oct 19, 2016
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  3. update mni template. close nipreps#218

    @oesteban
    oesteban committed Oct 19, 2016
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  4. update niworkflows version, and head mask source

    @oesteban
    oesteban committed Oct 19, 2016
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  5. compute overlap between MNI tpms and estimated ones

    @oesteban
    oesteban committed Oct 19, 2016
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  6. fix FBER masks, close nipreps#217

    @oesteban
    oesteban committed Oct 19, 2016
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  7. fix error in fber function, pylint fixes

    @oesteban
    oesteban committed Oct 19, 2016
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  8. remove unnecessary import

    @oesteban
    oesteban committed Oct 19, 2016
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