23.1.1

Release Notes

A long-overdue hotfix release addressing many bugs generated during the development of the new dMRI workflows and some relating to improvements in handling multi-echo fMRI.
The release also includes one year of maintenance actions and a general code cleanup with Ruff.

What's Changed

• FIX: Missing connection to head-motion estimation node in DWI workflow by @oesteban in #1207
• FIX: Revise porting to Loader by @oesteban in #1201
• FIX: Revise the last two sloppy merges by @oesteban in #1200
• FIX: Move from pkg_resources to niworkflows.data.Loader by @oesteban in #1199
• FIX: DIPY not listed as a dependency by @oesteban in #1197
• FIX: Include dwidenoise within Docker image by @oesteban in #1196
• FIX: Copy name attribute of dataset_description.json from input dataset by @celprov in #1187
• FIX: Remove FD as an iterfield in MapNode causing crash with ME-BOLD by @celprov in #1179
• FIX: Incorrect plugin metadata passed to Report Assembler by @oesteban in #1188
• FIX: Temporary fix of the missing "dwi" key by @celprov in #1174
• FIX: Rearrange multi-echo report by @celprov in #1164
• FIX: Typo in inputnode field in dMRI masking workflow by @celprov in #1165
• FIX: Bug in group level workflow by @celprov in #1148
• FIX: Bugs in DWI workflow by @celprov in #1147
• FIX: Use simpler DWI reference workflow by @yibeichan in #1145
• FIX: Drop deprecated Networkx's API by @celprov in #1137
• FIX: Replace np.float by np.float64 by @celprov in #1140
• ENH: Improved logging and optimize early checkpoint on subjects by @oesteban in #1198
• ENH: Store confound timeseries data by @psadil in #1166
• ENH: Large overhaul of the functional workflow w/focus on ME-EPI by @oesteban in #1155
• ENH: Implement BIDS filters file and drop legacy BIDS querying by @oesteban in #1154
• ENH: Swap background and zoomed-in visualizations in anatomical reports by @oesteban in #1151
• MAINT: Test on Python 3.12 by @DimitriPapadopoulos in #1156
• MAINT: Disable flaky T1w test on CircleCI by @oesteban in #1202
• MAINT: Overhaul of the Dockerfile by @oesteban in #1195
• MAINT: Revise package's extra dependencies by @oesteban in #1194
• MAINT: Clean up some setuptools_scm remnants by @oesteban in #1193
• MAINT: Load FMRISummary from NiReports rather than NiWorkflows by @celprov in #1167
• MAINT: Update to latest migas' API by @mgxd in #1160
• MAINT: Update bold to large resource class in config.yml by @oesteban in #1158
• MAINT: Refresh cached intermediate results by @oesteban in #1143
• MAINT: Simplify GitHub actions checks and update action versions by @effigies in #1141
• MAINT: Python 3.11 is supported by @DimitriPapadopoulos in #1123
• MAINT: Apply suggestions from pyupgrade by @DimitriPapadopoulos in #1124
• DOC: Update Sphinx pinned version to 5 by @oesteban in #1192
• DOC: http:// → https:// by @DimitriPapadopoulos in #1126
• DOC: Add info on the FreeSurfer requirement for bare install to address #1034 by @neurorepro in #1130
• STY: Add Ruff config and fix all warnings and errors by @oesteban in #1203
• STY: Remove extraneous parentheses by @DimitriPapadopoulos in #1186
• STY: Apply a few refurb suggestions by @DimitriPapadopoulos in #1162
• STY: Fix typo found by codespell by @DimitriPapadopoulos in #1161

New Contributors

• @neurorepro made their first contribution in #1130
• @DimitriPapadopoulos made their first contribution in #1126
• @yibeichan made their first contribution in #1145

Full Changelog: 23.1.0...23.1.1