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CI: Update build to match fMRIPrep #323

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merged 6 commits into from
Feb 15, 2023
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@effigies effigies commented Feb 6, 2023

Build images from Ubuntu 22.04, which also requires upgrading the CircleCI machines to 22.04 due to some fixes in Docker (see https://stackoverflow.com/questions/71941032/why-i-cannot-run-apt-update-inside-a-fresh-ubuntu22-04).

Also add connectome workbench in preparation for #321/#322 and upgrade FreeSurfer and Convert3d for parity.

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codecov-commenter commented Feb 15, 2023

Codecov Report

Base: 69.62% // Head: 66.58% // Decreases project coverage by -3.04% ⚠️

Coverage data is based on head (696c1ec) compared to base (99b0cfd).
Patch has no changes to coverable lines.

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Additional details and impacted files
@@            Coverage Diff             @@
##           master     #323      +/-   ##
==========================================
- Coverage   69.62%   66.58%   -3.04%     
==========================================
  Files          18       18              
  Lines        1185     1185              
  Branches      202      202              
==========================================
- Hits          825      789      -36     
- Misses        295      338      +43     
+ Partials       65       58       -7     
Flag Coverage Δ
ds005 56.96% <ø> (-3.30%) ⬇️
ds054 48.86% <ø> (ø)

Flags with carried forward coverage won't be shown. Click here to find out more.

Impacted Files Coverage Δ
smriprep/interfaces/surf.py 32.00% <0.00%> (-38.00%) ⬇️
smriprep/interfaces/freesurfer.py 56.43% <0.00%> (-10.90%) ⬇️
smriprep/interfaces/reports.py 86.07% <0.00%> (-6.33%) ⬇️
smriprep/cli/run.py 76.99% <0.00%> (-0.47%) ⬇️

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@effigies effigies merged commit 188f1d1 into nipreps:master Feb 15, 2023
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2 participants