Merge pull request #2 from adamnovak/master

Making it easier for people to know they need Entrez Direct.
nouyang-curoverse · May 5, 2015 · 8f9c580 · 8f9c580
2 parents f99c57d + 97fc388
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diff --git a/Readme.md b/Readme.md
@@ -25,8 +25,8 @@ The FASTA files are in the `FASTA` directory and total ~8 MB. They are named `Ge
 	    KIR
 		    (17 files)
 	    SMA-6606.fa
-		    BRCA2-675.fa
-		    BRCA1-672.fa
+	    BRCA2-675.fa
+	    BRCA1-672.fa
 
 **Preview the collection contents**
 
@@ -54,6 +54,8 @@ In short:
     $ sh ./geneID_to_refseq_regions.sh ids.csv
 
 
+Note that the [Entrez Direct](http://www.ncbi.nlm.nih.gov/books/NBK179288/) tools must be available on your PATH.
+
 This describes the process I used to create these FASTA files.
 First, compile a list of GeneIDs for each region. I did this by hand in a google doc and the results are at in this repository: `ids.csv`.
 

diff --git a/geneID_to_refseq_regions.sh b/geneID_to_refseq_regions.sh
@@ -1,4 +1,8 @@
 #!/bin/bash
+
+# Die on errors
+set -e
+
 GENEIDFILE=$1
 NUMLINES=$(wc -l $GENEIDFILE | cut -d ' ' -f1)
 echo $NUMLINES