NumPY 1.17.0rc1 is available to Python 2.7 #13911
Comments
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That's interesting. Sounds like a PyPI problem, but maybe there is something more we need to configure. |
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What command is azure running to cause this? It seems something like git clone https://github.com/statsmodels/statsmodels
virtualenv /tmp/python2
source /tmp/python2/bin/activate
cd statsmodels
pip -v
# reports pip 19.1.1
pip install -r requirements.txt
# reports Successfully installed numpy-1.16.4 pandas-0.24.2 \
# patsy-0.5.1 python-dateutil-2.8.0 pytz-2019.1 scipy-1.2.2 six-1.12.0 |
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Same, but requirements has |
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Can you somehow figure out what versions of python/pip/??? are involved? Without a reproducible isolated environment this is going to be hard to track down |
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Python is 2.7. pip is latest since line above is |
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Here's a Dockerfile to replicate: This is the output when building: |
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On Fri, Jul 5, 2019 at 3:24 AM Tim Joseph Dumol ***@***.***> wrote:
Here's a Dockerfile to replicate:
FROM python:2
RUN pip install -U pip && pip install gensim==2.1
There's no --pre in this, that should pick up numpy 1.16.x
Although weirdly gensim says in its setup.py that 1.16.1 is the latest
py2-compatible release:
#
# 1.11.3 is the oldest version of numpy that we support, for historical
reasons.
# 1.16.1 is the last numpy version to support Py2.
#
# Similarly, 4.6.4 is the last pytest version to support Py2.
#
# https://docs.scipy.org/doc/numpy/release.html
# https://docs.pytest.org/en/latest/py27-py34-deprecation.html
#
if PY2:
NUMPY_STR = 'numpy >= 1.11.3, <= 1.16.1'
PYTEST_STR = 'pytest == 4.6.4'
else:
NUMPY_STR = 'numpy >= 1.11.3'
PYTEST_STR = 'pytest'
This is the output when building:
…
Collecting gensim==2.1
Downloading https://files.pythonhosted.org/packages/0c/35/0e2dbd6ff005d021ab89bcb35baeeff19bf7a3f30f75f98820f1d2876b39/gensim-2.1.0.tar.gz (15.1MB)
ERROR: Complete output from command python setup.py egg_info:
ERROR: Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/tmp/pip-install-Otd0kv/gensim/setup.py", line 294, in <module>
include_package_data=True,
File "/usr/local/lib/python2.7/site-packages/setuptools/__init__.py", line 144, in setup
_install_setup_requires(attrs)
File "/usr/local/lib/python2.7/site-packages/setuptools/__init__.py", line 139, in _install_setup_requires
dist.fetch_build_eggs(dist.setup_requires)
File "/usr/local/lib/python2.7/site-packages/setuptools/dist.py", line 717, in fetch_build_eggs
replace_conflicting=True,
File "/usr/local/lib/python2.7/site-packages/pkg_resources/__init__.py", line 782, in resolve
replace_conflicting=replace_conflicting
File "/usr/local/lib/python2.7/site-packages/pkg_resources/__init__.py", line 1065, in best_match
return self.obtain(req, installer)
File "/usr/local/lib/python2.7/site-packages/pkg_resources/__init__.py", line 1077, in obtain
return installer(requirement)
File "/usr/local/lib/python2.7/site-packages/setuptools/dist.py", line 784, in fetch_build_egg
return cmd.easy_install(req)
File "/usr/local/lib/python2.7/site-packages/setuptools/command/easy_install.py", line 679, in easy_install
return self.install_item(spec, dist.location, tmpdir, deps)
File "/usr/local/lib/python2.7/site-packages/setuptools/command/easy_install.py", line 705, in install_item
dists = self.install_eggs(spec, download, tmpdir)
File "/usr/local/lib/python2.7/site-packages/setuptools/command/easy_install.py", line 890, in install_eggs
return self.build_and_install(setup_script, setup_base)
File "/usr/local/lib/python2.7/site-packages/setuptools/command/easy_install.py", line 1158, in build_and_install
self.run_setup(setup_script, setup_base, args)
File "/usr/local/lib/python2.7/site-packages/setuptools/command/easy_install.py", line 1144, in run_setup
run_setup(setup_script, args)
File "/usr/local/lib/python2.7/site-packages/setuptools/sandbox.py", line 253, in run_setup
raise
File "/usr/local/lib/python2.7/contextlib.py", line 35, in __exit__
self.gen.throw(type, value, traceback)
File "/usr/local/lib/python2.7/site-packages/setuptools/sandbox.py", line 195, in setup_context
yield
File "/usr/local/lib/python2.7/contextlib.py", line 35, in __exit__
self.gen.throw(type, value, traceback)
File "/usr/local/lib/python2.7/site-packages/setuptools/sandbox.py", line 166, in save_modules
saved_exc.resume()
File "/usr/local/lib/python2.7/site-packages/setuptools/sandbox.py", line 141, in resume
six.reraise(type, exc, self._tb)
File "/usr/local/lib/python2.7/site-packages/setuptools/sandbox.py", line 154, in save_modules
yield saved
File "/usr/local/lib/python2.7/site-packages/setuptools/sandbox.py", line 195, in setup_context
yield
File "/usr/local/lib/python2.7/site-packages/setuptools/sandbox.py", line 250, in run_setup
_execfile(setup_script, ns)
File "/usr/local/lib/python2.7/site-packages/setuptools/sandbox.py", line 45, in _execfile
exec(code, globals, locals)
File "/tmp/easy_install-HdZ5tS/numpy-1.17.0rc1/setup.py", line 31, in <module>
class custom_build_ext(build_ext):
RuntimeError: Python version >= 3.5 required.
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That's unreleased code, on gensim 3.7.3 (latest released), it's always: Interestingly, installing gensim 3.7.3 seems to work, whereas installing gensim 2.1.0 doesn't, even though both have upper-bound-less numpy requirement strings. |
Hmm, that definitely points to a Would be good to get some clarity on this before the final 1.17.0 release (but I'm not volunteering, no time in the next week, sorry).
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@bashtage could you update setuptools (or report the version in play when this fails)? |
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If I add an update to setuptools in addition to pip then it works correctly. |
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Closing. Please reopen if the issue is still not settled. |
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I am still having an issue when I deploy to a Google App Engine Flex Environment.
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Have you upgraded pip and setuptools? |
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@bashtage I don't believe you are able to upgrade setuptools or pip in Google App Engine Flex environment. I could be wrong though. |
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Can you pin numpy<=1.16? |
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I actually have the following in my requirements.txt: numpy==1.16.1 This is actually installed previous to reverse-geocoder which has the following requirement: install_requires=['numpy>=1.11.0', 'scipy>=0.17.1',] So I am unsure why it even tries to pickup numpy-1.17.0rc1 in the first place. |
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I'm also seeing this issue when deploying to Pivotal Cloud Foundry. I can't update the python buildpacks and have numpy pinned to a lower verison in my requirements.txt but thats not being respected when installing pandas |
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You cannot update setuptools via |
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I am going to have to use a custom runtime for Google Cloud App Engine Flex Environment. I had set the following in my requirements:
However still run into the same issue. A custom runtime seems to be the only viable option at this time. https://cloud.google.com/appengine/docs/flexible/python/customizing-the-python-runtime |
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FWIW, the issue is still reproducible with latest setuptools (41.0.1) and pip (19.1.1): produces: Yet somehow the same Dockerfile with |
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We are installing numpy first, and then installing statsmodels. This seems to work on azure/python 2.7. The relevant lines are: The log is big, but the key bits are |
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I also solved my issue with Google App Engine Flex by creating a custom run time environment, so I would be able to actually update pip and setuptools. Here is my Dockerfile if anyone is interested, I removed the pinned numpy and reverse-geocoder from my requirements and installed them with the below: |
I'm not sure if this is a PyPI limitation where availability depends on the most recent release, but 1.17.0rc1 is being made available to Python 2.7.
This is from an Azure run of statsmodels:
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