Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

[NTR] 'CD24-positive, CD-133-positive, vimentin-positive proximal tubular cell' #1856

Closed
ghost opened this issue Feb 23, 2023 · 4 comments
Closed

Comments

@ghost
Copy link

ghost commented Feb 23, 2023

Preferred term label
CD24-positive, CD-133-positive, vimentin-positive proximal tubular cell

Synonyms
(broad): CD24-positive tubular cell PMID:23124355
(broad): CD24+CD133+ tubular cell PMID:23124355
(broad): CD133+CD24+CD106- tubular cell https://doi.org/10.1002/stem.1130
**Note- Consider creating separate classes for this cell type in distal convoluted tubule and connecting segment:
"However, CD133+CD24+ tubular cells were localized in the distal convoluted tubule and the connecting segment..." but compare to findings in PMID:23124355

Definition (free text, with reference(s), please. PubMed ID format is PMID:XXXXXX)
A CD24-positive, CD-133-positive, vimentin-positive cell found scattered throughout a renal proximal tubule and that may participate in tubular regeneration. Compared to other proximal tubular cell types, this cell contains less cytoplasm, fewer mitochondria and no brush border.
PMID:23124355
PMID:21281815

Parent cell type term
CL:0002306 'epithelial cell of proximal tubule'
expresses some 'signal transducer CD24'
expresses some prominin-1
expresses some vimentin (needs imported after GO update: http://purl.obolibrary.org/obo/PR_000017298)

What is the anatomical structure that the cell is a part of?
‘part of’ some ‘proximal tubular epithelium’

Additional notes or concerns
Comment: After acute tubular injury, this cell type becomes more numerous. In healthy rat kidneys, this cell is not detectable, whereas after unilateral ureteral obstruction (renal injury), it may appear de novo, arguing against the notion that this cell type represents a pre-existing progenitor cell population. In at least one study, data indicate that this cell type represents transiently dedifferentiated tubular cells involved in regeneration.
PMID:23124355

@ghost ghost self-assigned this Feb 23, 2023
@dosumis
Copy link
Contributor

dosumis commented Feb 23, 2023

Are these rat markers?

@ghost
Copy link
Author

ghost commented Feb 23, 2023

Are these rat markers?

The papers mention human and rat subjects.
The PR terms refer to the human gene products or "1:1 ortholog thereof".

@ghost
Copy link
Author

ghost commented Mar 2, 2023

Note: adding this term is paused until the new GO release is available.

ghost pushed a commit that referenced this issue Mar 8, 2023
…entin+-proximal-tubular-cell

Addresses #1856 NTR- CD24+, CD-133+, vimentin+ proximal tubular cell
@ghost
Copy link
Author

ghost commented Mar 8, 2023

CL:4030038 'CD24-positive, CD-133-positive, vimentin-positive proximal tubular cell' has been to CL and should appear in the next release.

This issue was closed.
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
Development

No branches or pull requests

1 participant