* Added UMLS xrefs for neuro subset using NCIT and NIFGA. Fixes issue …

…#302 * Replaced multiple text defs with those from NIFSTD. Fixes issue #300 * Adding pons relationships for pontine tracts. Addresses issue #299
obophenotype · Jul 12, 2013 · ab5d54f · ab5d54f
1 parent 16eebda
commit ab5d54f
Show file tree

Hide file tree

Showing 144 changed files with 29,393 additions and 19,463 deletions.
diff --git a/Makefile b/Makefile
@@ -630,8 +630,7 @@ release:
 	cp uberon-taxmod-euarchontoglires.owl $(RELDIR)/subsets/euarchontoglires-basic.owl ;\
 	cp composite-{vertebrate,metazoan}.{obo,owl} $(RELDIR) ;\
 	cp reference/*{owl,html} reference/*[0-9] $(RELDIR)/reference  ;\
-	#(cd $(RELDIR)/reference/ && svn add *.owl && svn add reference_[0-9]* && svn ps svn:mime-type text/html reference_[0-9]*) ;\
-	#make release-diff ;\
+	make release-diff ;\
 	cp diffs/* $(RELDIR)/diffs/ ;\
 	echo done ;\
 #	cd $(RELDIR) && svn commit -m ''

diff --git a/README.md b/README.md
@@ -1,10 +1,12 @@
-# Uberon
 
 Uberon is a multi-species anatomy ontology.
 
-This repository contains the ontology source, and is primarily of
-relevance to Uberon editors/developers. For an overview of the ontology, plus
-usage instructions etc see [uberon.org](http://uberon.org).
+This repository contains the ontology *source*, and is primarily of
+relevance to Uberon editors/developers.
+
+For an overview of the ontology, plus usage instructions on how to
+download the compiled versions of the ontology, please visit
+[uberon.org](http://uberon.org).
 
 ## Content
 
@@ -14,3 +16,4 @@ This repository contains the editors version of the ontology
 ## Editors:
 
 See the file README-editors.txt
+
diff --git a/basic.obo b/basic.obo
diff --git a/bridge/cl-bridge-to-aao.obo b/bridge/cl-bridge-to-aao.obo
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-aao
-data-version: 2013-07-08
+data-version: 2013-07-12
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 property_value: dc-title "CL bridge to aao" xsd:string
 property_value: dc-description "Equivalence axioms between AAO and CL. Note that AAO is in the process of being merged into the core CL, so this mapping will become deprecated" xsd:string

diff --git a/bridge/cl-bridge-to-aao.owl b/bridge/cl-bridge-to-aao.owl
@@ -21,7 +21,7 @@
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
         <terms:references rdf:resource="http://purl.obolibrary.org/obo/aao.owl"/>
         <terms:references rdf:resource="http://purl.obolibrary.org/obo/cl.owl"/>
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-aao/2013-07-08/uberon/bridge/cl-bridge-to-aao.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-aao/2013-07-12/uberon/bridge/cl-bridge-to-aao.owl"/>
     </owl:Ontology>
 
 

diff --git a/bridge/cl-bridge-to-bila.obo b/bridge/cl-bridge-to-bila.obo
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-bila
-data-version: 2013-07-08
+data-version: 2013-07-12
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 
 [Typedef]

diff --git a/bridge/cl-bridge-to-bila.owl b/bridge/cl-bridge-to-bila.owl
@@ -13,7 +13,7 @@
      xmlns:doap="http://usefulinc.com/ns/doap#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-bila.owl">
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-bila/2013-07-08/uberon/bridge/cl-bridge-to-bila.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-bila/2013-07-12/uberon/bridge/cl-bridge-to-bila.owl"/>
     </owl:Ontology>
 
 

diff --git a/bridge/cl-bridge-to-bspo.obo b/bridge/cl-bridge-to-bspo.obo
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-bspo
-data-version: 2013-07-08
+data-version: 2013-07-12
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 
 [Typedef]

diff --git a/bridge/cl-bridge-to-bspo.owl b/bridge/cl-bridge-to-bspo.owl
@@ -13,7 +13,7 @@
      xmlns:doap="http://usefulinc.com/ns/doap#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-bspo.owl">
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-bspo/2013-07-08/uberon/bridge/cl-bridge-to-bspo.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-bspo/2013-07-12/uberon/bridge/cl-bridge-to-bspo.owl"/>
     </owl:Ontology>
 
 

diff --git a/bridge/cl-bridge-to-caro.obo b/bridge/cl-bridge-to-caro.obo
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-caro
-data-version: 2013-07-08
+data-version: 2013-07-12
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 
 [Term]

diff --git a/bridge/cl-bridge-to-caro.owl b/bridge/cl-bridge-to-caro.owl
@@ -13,7 +13,7 @@
      xmlns:doap="http://usefulinc.com/ns/doap#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-caro.owl">
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-caro/2013-07-08/uberon/bridge/cl-bridge-to-caro.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-caro/2013-07-12/uberon/bridge/cl-bridge-to-caro.owl"/>
     </owl:Ontology>
 
 

diff --git a/bridge/cl-bridge-to-ehdaa.obo b/bridge/cl-bridge-to-ehdaa.obo
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-ehdaa
-data-version: 2013-07-08
+data-version: 2013-07-12
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 
 [Typedef]

diff --git a/bridge/cl-bridge-to-ehdaa.owl b/bridge/cl-bridge-to-ehdaa.owl
@@ -13,7 +13,7 @@
      xmlns:doap="http://usefulinc.com/ns/doap#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ehdaa.owl">
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ehdaa/2013-07-08/uberon/bridge/cl-bridge-to-ehdaa.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ehdaa/2013-07-12/uberon/bridge/cl-bridge-to-ehdaa.owl"/>
     </owl:Ontology>
 
 

diff --git a/bridge/cl-bridge-to-ehdaa2.obo b/bridge/cl-bridge-to-ehdaa2.obo
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-ehdaa2
-data-version: 2013-07-08
+data-version: 2013-07-12
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 property_value: dc-title "CL bridge to ehdaa2" xsd:string
 property_value: dc-description "Equivalence axioms between EHDAA2 and CL. EHDAA2 replaces EHDAA" xsd:string

diff --git a/bridge/cl-bridge-to-ehdaa2.owl b/bridge/cl-bridge-to-ehdaa2.owl
@@ -19,7 +19,7 @@
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
         <terms:references rdf:resource="http://purl.obolibrary.org/obo/cl.owl"/>
         <terms:references rdf:resource="http://purl.obolibrary.org/obo/ehdaa2.owl"/>
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ehdaa2/2013-07-08/uberon/bridge/cl-bridge-to-ehdaa2.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ehdaa2/2013-07-12/uberon/bridge/cl-bridge-to-ehdaa2.owl"/>
     </owl:Ontology>
 
 

diff --git a/bridge/cl-bridge-to-emapa.obo b/bridge/cl-bridge-to-emapa.obo
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-emapa
-data-version: 2013-07-08
+data-version: 2013-07-12
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 property_value: dc-title "CL bridge to emapa" xsd:string
 property_value: dc-description "Taxonomic equivalence axioms between EMAPA (abstract developmental mouse) and CL" xsd:string

diff --git a/bridge/cl-bridge-to-emapa.owl b/bridge/cl-bridge-to-emapa.owl
@@ -21,7 +21,7 @@
         <dc:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string">vHOG editors</dc:creator>
         <terms:references rdf:resource="http://purl.obolibrary.org/obo/cl.owl"/>
         <terms:references rdf:resource="http://purl.obolibrary.org/obo/fma.owl"/>
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-emapa/2013-07-08/uberon/bridge/cl-bridge-to-emapa.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-emapa/2013-07-12/uberon/bridge/cl-bridge-to-emapa.owl"/>
     </owl:Ontology>
 
 

diff --git a/bridge/cl-bridge-to-fbbt.obo b/bridge/cl-bridge-to-fbbt.obo
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-fbbt
-data-version: 2013-07-08
+data-version: 2013-07-12
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 property_value: dc-title "CL bridge to fbbt" xsd:string
 property_value: dc-description "Taxonomic equivalence axioms between the drosophila anatomy ontology and CL. Note that currently CL focuses on chordate anatomy so there are only a minimal set of equivalencies for high level classes. In future CL may bridge via the arthropod anatomy ontology" xsd:string

diff --git a/bridge/cl-bridge-to-fbbt.owl b/bridge/cl-bridge-to-fbbt.owl
@@ -19,7 +19,7 @@
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
         <terms:references rdf:resource="http://purl.obolibrary.org/obo/cl.owl"/>
         <terms:references rdf:resource="http://purl.obolibrary.org/obo/fbbt.owl"/>
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt/2013-07-08/uberon/bridge/cl-bridge-to-fbbt.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt/2013-07-12/uberon/bridge/cl-bridge-to-fbbt.owl"/>
     </owl:Ontology>
 
 

diff --git a/bridge/cl-bridge-to-fma.obo b/bridge/cl-bridge-to-fma.obo
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-fma
-data-version: 2013-07-08
+data-version: 2013-07-12
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 property_value: dc-title "CL bridge to fma" xsd:string
 property_value: dc-description "Taxonomic equivalence axioms between the FMA and CL" xsd:string

diff --git a/bridge/cl-bridge-to-fma.owl b/bridge/cl-bridge-to-fma.owl
@@ -20,7 +20,7 @@
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
         <terms:references rdf:resource="http://purl.obolibrary.org/obo/cl.owl"/>
         <terms:references rdf:resource="http://purl.obolibrary.org/obo/fma.owl"/>
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fma/2013-07-08/uberon/bridge/cl-bridge-to-fma.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fma/2013-07-12/uberon/bridge/cl-bridge-to-fma.owl"/>
     </owl:Ontology>
 
 

diff --git a/bridge/cl-bridge-to-go.obo b/bridge/cl-bridge-to-go.obo
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-go
-data-version: 2013-07-08
+data-version: 2013-07-12
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 
 [Term]

diff --git a/bridge/cl-bridge-to-go.owl b/bridge/cl-bridge-to-go.owl
@@ -13,7 +13,7 @@
      xmlns:doap="http://usefulinc.com/ns/doap#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-go.owl">
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-go/2013-07-08/uberon/bridge/cl-bridge-to-go.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-go/2013-07-12/uberon/bridge/cl-bridge-to-go.owl"/>
     </owl:Ontology>
 
 

diff --git a/bridge/cl-bridge-to-hao.obo b/bridge/cl-bridge-to-hao.obo
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-hao
-data-version: 2013-07-08
+data-version: 2013-07-12
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 
 [Term]

diff --git a/bridge/cl-bridge-to-hao.owl b/bridge/cl-bridge-to-hao.owl
@@ -13,7 +13,7 @@
      xmlns:doap="http://usefulinc.com/ns/doap#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-hao.owl">
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-hao/2013-07-08/uberon/bridge/cl-bridge-to-hao.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-hao/2013-07-12/uberon/bridge/cl-bridge-to-hao.owl"/>
     </owl:Ontology>
 
 

diff --git a/bridge/cl-bridge-to-ma.obo b/bridge/cl-bridge-to-ma.obo
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-ma
-data-version: 2013-07-08
+data-version: 2013-07-12
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 property_value: dc-title "CL bridge to ma" xsd:string
 property_value: dc-description "Taxonomic equivalence axioms between adult moouse anatomy and CL" xsd:string

diff --git a/bridge/cl-bridge-to-ma.owl b/bridge/cl-bridge-to-ma.owl
@@ -20,7 +20,7 @@
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
         <terms:references rdf:resource="http://purl.obolibrary.org/obo/cl.owl"/>
         <terms:references rdf:resource="http://purl.obolibrary.org/obo/ma.owl"/>
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ma/2013-07-08/uberon/bridge/cl-bridge-to-ma.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ma/2013-07-12/uberon/bridge/cl-bridge-to-ma.owl"/>
     </owl:Ontology>
 
 

diff --git a/bridge/cl-bridge-to-mfo.obo b/bridge/cl-bridge-to-mfo.obo
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-mfo
-data-version: 2013-07-08
+data-version: 2013-07-12
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 
 [Term]

diff --git a/bridge/cl-bridge-to-mfo.owl b/bridge/cl-bridge-to-mfo.owl
@@ -13,7 +13,7 @@
      xmlns:doap="http://usefulinc.com/ns/doap#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-mfo.owl">
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-mfo/2013-07-08/uberon/bridge/cl-bridge-to-mfo.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-mfo/2013-07-12/uberon/bridge/cl-bridge-to-mfo.owl"/>
     </owl:Ontology>
 
 

diff --git a/bridge/cl-bridge-to-ncithesaurus.obo b/bridge/cl-bridge-to-ncithesaurus.obo
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-ncithesaurus
-data-version: 2013-07-08
+data-version: 2013-07-12
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 
 [Term]

diff --git a/bridge/cl-bridge-to-ncithesaurus.owl b/bridge/cl-bridge-to-ncithesaurus.owl
@@ -13,7 +13,7 @@
      xmlns:doap="http://usefulinc.com/ns/doap#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ncithesaurus.owl">
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ncithesaurus/2013-07-08/uberon/bridge/cl-bridge-to-ncithesaurus.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ncithesaurus/2013-07-12/uberon/bridge/cl-bridge-to-ncithesaurus.owl"/>
     </owl:Ontology>
 
 

diff --git a/bridge/cl-bridge-to-nif_grossanatomy.obo b/bridge/cl-bridge-to-nif_grossanatomy.obo
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-nif_grossanatomy
-data-version: 2013-07-08
+data-version: 2013-07-12
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 
 [Typedef]

diff --git a/bridge/cl-bridge-to-nif_grossanatomy.owl b/bridge/cl-bridge-to-nif_grossanatomy.owl
@@ -13,7 +13,7 @@
      xmlns:doap="http://usefulinc.com/ns/doap#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-nif_grossanatomy.owl">
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-nif_grossanatomy/2013-07-08/uberon/bridge/cl-bridge-to-nif_grossanatomy.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-nif_grossanatomy/2013-07-12/uberon/bridge/cl-bridge-to-nif_grossanatomy.owl"/>
     </owl:Ontology>
 
 

diff --git a/bridge/cl-bridge-to-og.obo b/bridge/cl-bridge-to-og.obo
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-og
-data-version: 2013-07-08
+data-version: 2013-07-12
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 
 [Typedef]

diff --git a/bridge/cl-bridge-to-og.owl b/bridge/cl-bridge-to-og.owl
@@ -13,7 +13,7 @@
      xmlns:doap="http://usefulinc.com/ns/doap#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-og.owl">
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-og/2013-07-08/uberon/bridge/cl-bridge-to-og.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-og/2013-07-12/uberon/bridge/cl-bridge-to-og.owl"/>
     </owl:Ontology>
 
 

diff --git a/bridge/cl-bridge-to-spd.obo b/bridge/cl-bridge-to-spd.obo
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-spd
-data-version: 2013-07-08
+data-version: 2013-07-12
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 
 [Term]

diff --git a/bridge/cl-bridge-to-spd.owl b/bridge/cl-bridge-to-spd.owl
@@ -13,7 +13,7 @@
      xmlns:doap="http://usefulinc.com/ns/doap#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-spd.owl">
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-spd/2013-07-08/uberon/bridge/cl-bridge-to-spd.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-spd/2013-07-12/uberon/bridge/cl-bridge-to-spd.owl"/>
     </owl:Ontology>
 
 

diff --git a/bridge/cl-bridge-to-tads.obo b/bridge/cl-bridge-to-tads.obo
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-tads
-data-version: 2013-07-08
+data-version: 2013-07-12
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 
 [Term]

diff --git a/bridge/cl-bridge-to-tads.owl b/bridge/cl-bridge-to-tads.owl
@@ -13,7 +13,7 @@
      xmlns:doap="http://usefulinc.com/ns/doap#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-tads.owl">
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-tads/2013-07-08/uberon/bridge/cl-bridge-to-tads.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-tads/2013-07-12/uberon/bridge/cl-bridge-to-tads.owl"/>
     </owl:Ontology>
 
 

diff --git a/bridge/cl-bridge-to-tao.obo b/bridge/cl-bridge-to-tao.obo
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-tao
-data-version: 2013-07-08
+data-version: 2013-07-12
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 property_value: dc-title "CL bridge to tao" xsd:string
 property_value: dc-description "Taxonomic equivalence axioms between TAO and CL. Note that TAO is in the process of being merged into the core CL, so this mapping will become deprecated" xsd:string

diff --git a/bridge/cl-bridge-to-tao.owl b/bridge/cl-bridge-to-tao.owl
@@ -20,7 +20,7 @@
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
         <terms:references rdf:resource="http://purl.obolibrary.org/obo/cl.owl"/>
         <terms:references rdf:resource="http://purl.obolibrary.org/obo/tao.owl"/>
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-tao/2013-07-08/uberon/bridge/cl-bridge-to-tao.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-tao/2013-07-12/uberon/bridge/cl-bridge-to-tao.owl"/>
     </owl:Ontology>
 
 

diff --git a/bridge/cl-bridge-to-tgma.obo b/bridge/cl-bridge-to-tgma.obo
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-tgma
-data-version: 2013-07-08
+data-version: 2013-07-12
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 
 [Term]