disambiguated organ of zuckerkandl and paraganglion. #664. Also added…

… aortic body

scratch/ubr-to-many-emapa.tsv

@@ -66,8 +66,6 @@ EMAPA:17823 ! lateral semicircular canal epithelium	UBERON:0003240 ! epithelium
 EMAPA:17823 ! lateral semicircular canal epithelium	UBERON:0003241 ! epithelium of utricle	__n/a__	N
 EMAPA:18025 ! pectoral girdle and thoracic body wall skeleton	UBERON:0003459 ! chest bone	MA:0000547 ! chest bone	?See above
 EMAPA:18025 ! pectoral girdle and thoracic body wall skeleton	UBERON:0007831 ! pectoral girdle skeleton	__n/a__	?Dont think so
-EMAPA:18223 ! paraganglion of Zuckerkandl	UBERON:0001237 ! paraaortic body	MA:0001137 ! organ of Zuckerkandl	See potential confusion http://en.wikipedia.org/wiki/Organ_of_Zuckerkandl
-EMAPA:18223 ! paraganglion of Zuckerkandl	UBERON:0012279 ! paraganglion	__n/a__	See potential confusion http://en.wikipedia.org/wiki/Organ_of_Zuckerkandl
 EMAPA:18577 ! sciatic nerve	UBERON:0001322 ! sciatic nerve	MA:0001172 ! sciatic nerve	Y
 EMAPA:18577 ! sciatic nerve	UBERON:0002004 ! trunk of sciatic nerve	MA:0001178 ! sciatic nerve trunk	N - FIX IN MA
 EMAPA:18606 ! descending aorta	UBERON:0001514 ! descending aorta	__n/a__	Y

uberon_edit.obo

@@ -18442,7 +18442,7 @@ id: UBERON:0007194
 name: vesicular gland
 def: "The vesicular gland is part of the male reproductive system. The vesicular gland contributes fluids, energy substrates, and buffers to semen. It can be found near the Coagulating gland, which also belongs to the reproductive system." [BTO:0003717]
 property_value: taxon_notes "bipartite seminal vesicles, with a seminal gland and vesicular gland sharing a common duct are found in lagomorphs" xsd:string {source="Lombardi"}
-property_value: editor_note "TODO - check this agaist seminal vesicle" xsd:string
+property_value: editor_note "TODO - check this against seminal vesicle" xsd:string
 xref: BTO:0003717 ! vesicular gland
 xref: MA:0000405 ! vesicular gland
 is_a: UBERON:0010147 ! male accessory sex gland
@@ -18453,18 +18453,19 @@ xref: EMAPA:35920 ! vesicular gland
 [Term]
 id: UBERON:0008807
 name: coagulating gland
-def: "The anterior lobe of the prostate gland." [ncithesaurus:Coagulating_Gland]
+def: "A lobe of the prostate in rodents that is thin and tubular and is attached to the lesser curvature of the paired seminal vesicles. Secretes substances that contribute to the formation of the copulatory plug." [PMID:1806140, MP:0002771, PMID:12645922, PMID:3308446]
+comment: Taxon notes: In rodents, the prostate gland consists of three lobes, the anterior prostate (AP; also known as the coagulating gland), the dorsolateral prostate (DLP), and the ventral prostate (VP). These lobes are arranged circumferentially around the urethra and display characteristic patterns of ductal branching and protein secretion (PMID:3308446). In contrast, the adult human prostate lacks discernible lobular organization and, instead, completely envelops the urethra at the base of the bladder (PMID:3308446).[MP]
 is_a: UBERON:0010147 ! male accessory sex gland
 relationship: part_of UBERON:0002367 {source="EMAPA", not_supported_by="MA"} ! prostate gland
+relationship: contributes_to_morphology_of UBERON:0002367 ! prostate gland
 xref: BTO:0000265 ! coagulating gland
 xref: EMAPA:35245 ! coagulating gland
 xref: EMAPA:29794 ! anterior prostate gland
 synonym: "anterior prostate gland" RELATED [EMAPA:29794]
-synonym: "prostate gland anterior lobe" RELATED [MA:0000402]
+synonym: "prostate gland anterior lobe" RELATED [MA:0000402, MP:0002771]
 xref: MA:0000402 ! coagulating gland
 xref: SCTID:78779004 ! Coagulating gland
 xref: ncithesaurus:Coagulating_Gland ! Coagulating Gland
-relationship: contributes_to_morphology_of UBERON:0002367 ! prostate gland
 subset: pheno_slim
 
 [Term]
@@ -31885,33 +31886,30 @@ xref: MESH:A06.224 ! chromaffin system
 xref: FMA:79645 ! chromaffin system
 
 [Term]
-id: UBERON:0012279 ! paraganglion
-name: paraganglion
+id: UBERON:0012279
+name: chromaffin paraganglion
 def: "Small bodies containing chromaffin cells occurring outside of the adrenal medulla, most commonly near the sympathetic ganglia and in organs such as the kidney, liver, heart and gonads." [MESH:A06.224.736, Wikipedia:Paraganglion]
 xref: Wikipedia:Paraganglion
-property_value: editor_note "unrevised" xsd:string
 synonym: "chromaffin paraganglia" RELATED PLURAL [MESH:A06.224.736]
 synonym: "chromaffin paraganglion" RELATED [MESH:A06.224.736]
 synonym: "chromaffin body" RELATED [MESH:A06.224.736]
-is_a: UBERON:0011216 ! organ system subdivision
+is_a: UBERON:0010001 {source="cjm"} ! cell cluster organ
+relationship: composed_primarily_of CL:0000166 ! chromaffin cell
 relationship: part_of UBERON:0000949 {source="FMA"} ! endocrine system
-relationship: has_part CL:0000166 ! chromaffin cell
 xref: FMA:15648 ! paraganglion
 xref: ncithesaurus:Paraganglion ! paraganglion
-xref: SCTID:329735008 ! Entire paraganglion of extremity
-xref: EMAPA:18223 ! paraganglion of Zuckerkandl
+xref: SCTID:33805007 ! Paraganglia structure
 xref: MESH:A06.224.736 ! chromaffin paraganglia
 xref: CALOHA:TS-2358 ! Paraganglia chromaffin
 xref: UMLS:C0030419 {source="ncithesaurus:Paraganglion"}
 
 [Term]
 id: UBERON:0001237
 name: paraaortic body
-def: "." [Wikipedia:Organ_of_Zuckerkandl]
+def: "A chromaffin paraganglion derived from neural crest located at the bifurcation of the aorta or at the origin of the inferior mesenteric artery." [Wikipedia:Organ_of_Zuckerkandl]
 xref: Wikipedia:Organ_of_Zuckerkandl
-property_value: editor_note "This class was created automatically from a combination of ontologies" xsd:string
 subset: uberon_slim
-synonym: "organ of zuckerkandl" EXACT []
+synonym: "organ of Zuckerkandl" EXACT []
 synonym: "para-aortic body" RELATED []
 synonym: "paraganglia of zuckerkandl" RELATED []
 synonym: "paraganglion of Zuckerkandl" EXACT [EMAPA:18223]
@@ -31929,6 +31927,21 @@ xref: ncithesaurus:Paraaortic ! paraaortic region
 property_value: foaf-depicted_by http://upload.wikimedia.org/wikipedia/commons/a/af/Gray531.png
 xref: UMLS:C0442134 {source="ncithesaurus:Paraaortic"}
 
+[Term]
+id: UBERON:0034971
+name: aortic body
+def: "one of several small clusters of chemoreceptors, baroreceptors, and supporting cells located along the aortic arch." [Wikipedia:Aortic_body]
+xref: Wikipedia:Aortic_body ! aortic body
+synonym: "aortic bodies" RELATED PLURAL [Wikipedia:Aortic_body]
+synonym: "aortic glands" RELATED PLURAL [Wikipedia:Aortic_body]
+synonym: "Zuckerkandl's body" RELATED [Wikipedia:Aortic_body]
+is_a: UBERON:0010001 ! cell cluster organ
+relationship: composed_primarily_of CL:0000197 ! receptor cell
+relationship: part_of UBERON:0004535 ! cardiovascular system
+relationship: part_of UBERON:0004363 ! pharyngeal arch artery
+xref: SCTID:75061007 ! Aortic body
+xref: ncithesaurus:Aortic_Body ! aortic body
+
 [Term]
 id: UBERON:0001238
 name: lamina propria of small intestine
@@ -35950,7 +35963,6 @@ xref: EMAPA:35712 ! prostate gland lobe
 [Term]
 id: UBERON:0001329
 name: prostate gland anterior lobe
-def: "The prostate lobe that appears as a thin tubular structure, attached to the lesser curvature of the paired seminal vesicles." [MP:0001163]
 property_value: editor_note "TODO - check - see comments from PMID:15163300" xsd:string
 synonym: "anterior lobe of prostate gland" EXACT []
 synonym: "commissure of prostate" EXACT []
@@ -97609,7 +97621,7 @@ synonym: "broca's diagonal gyrus" EXACT [FMA:61973]
 synonym: "diagonal band of Broca" EXACT []
 synonym: "diagonal gyrus" EXACT [FMA:61973]
 synonym: "olfactory fasciculus" EXACT [FMA:61973]
-synonym: "olfactory radiations of zuckerkandl" EXACT []
+synonym: "olfactory radiations of Zuckerkandl" EXACT []
 synonym: "band of Broca" RELATED [BTO:0002445]
 synonym: "bandaletta diagonalis (Broca)" RELATED [BTO:0002445]
 synonym: "stria diagonalis" RELATED [BTO:0002445]
@@ -104190,7 +104202,7 @@ synonym: "area parolfactoria" RELATED LATIN [Wikipedia:Subcallosal_area]
 property_value: foaf-depicted_by http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray732.png
 xref: UMLS:C0228282 {source="NIFSTD:birnlex_919"}
 xref: NeuroNames:278 {source="NIFSTD:birnlex_919"}
-synonym: "zuckerkandl's gyrus" RELATED [NeuroNames:278]
+synonym: "Zuckerkandl's gyrus" RELATED [NeuroNames:278]
 xref: BAMS:SCA ! subcallosal area
 
 [Term]