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OBO file uses undeclared synonym type def #2373

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balhoff opened this issue Mar 30, 2022 · 1 comment · Fixed by #2413
Closed

OBO file uses undeclared synonym type def #2373

balhoff opened this issue Mar 30, 2022 · 1 comment · Fixed by #2413
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@shawntanzk
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PLEASE USE https://github.com/orgs/ob...

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@balhoff
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balhoff commented Mar 30, 2022

PRO-short-label is used but not declared. This causes some OBO parsers to fail (correctly). Another I saw is PRO-common-name. These are properly declared in PRO.
@balhoff balhoff mentioned this issue Mar 30, 2022
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@anitacaron anitacaron added the tech label Apr 1, 2022
@matentzn
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If @shawntanzk refreshes the PRO import, this will be fixed.

@matentzn matentzn assigned shawntanzk and unassigned matentzn Apr 11, 2022
shawntanzk added a commit that referenced this issue Apr 11, 2022
@shawntanzk
Updating pro import
8c5983a 
Fixes #2373
@matentzn - doesnt seem to fix after updating pro -> not sure if it got updated right? (I update mirror and all) could you help me check if the diff has the changes?
@shawntanzk shawntanzk mentioned this issue Apr 11, 2022
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Updating pro import obophenotype/uberon
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@balhoff @anitacaron @matentzn @shawntanzk