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[new release] bistro and bistro-bio (0.6.0) #20010

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merged 5 commits into from
Nov 15, 2021

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pveber
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@pveber pveber commented Nov 14, 2021

A library to build and run distributed scientific workflows

CHANGES:

core library:

  • added ifelse and trywith constructs
  • moved bio-stuff in new package bistro-bio

engine:

  • precious items
  • repo clipping

ppx:

  • include script mechanism

bio:

  • added Bedtools.merge
  • added Samtools.faidx
  • added SE_or_PE
  • new wrapper rnaspades
  • new wrapper busco

CHANGES:

core library:
- added ifelse and trywith constructs
- moved bio-stuff in new package bistro-bio

engine:
- precious items
- repo clipping

ppx:
- include script mechanism

bio:
- added Bedtools.merge
- added Samtools.faidx
- added SE_or_PE
- new wrapper rnaspades
- new wrapper busco
@pveber
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pveber commented Nov 14, 2021

The remaining compilation failure is due to a missing constraint in future I believe.

@mseri
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mseri commented Nov 14, 2021

The remaining compilation failure is due to a missing constraint in future I believe.

Indeed, seems that biocaml needs to have a lower bound on core_kernel, although I am not sure which yet

pveber and others added 3 commits November 14, 2021 14:33
Co-authored-by: Marcello Seri <mseri@users.noreply.github.com>
Co-authored-by: Marcello Seri <mseri@users.noreply.github.com>
Co-authored-by: Marcello Seri <mseri@users.noreply.github.com>
@pveber
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pveber commented Nov 14, 2021

Indeed, seems that biocaml needs to have a lower bound on core_kernel, although I am not sure which yet

I'll investigate and submit a separate PR.

@mseri mseri merged commit 47b6f6f into ocaml:master Nov 15, 2021
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mseri commented Nov 15, 2021

Thanks

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2 participants