Agro scripting

Background

This script developed for the department of Agriculture of the Hebrew University of Jerusalem, By Ofer Ezrachi.

Installation

Make sure you installed the python interpreter (3.7 or above), as well as all the listed libraries in the requirements.txt file.
Note: if you are using JetBrains Pycharm as your IDE, you can just open the requirements.txt and in the top section the IDE will ask you if you want to install the listed libraries.

Data preparations

Plait

Make sure to supply to the script a plait similar to the plaits in the data folders. The plait should be in csv format.

Input

Make sure to save the sampling machine output as csv in UTF-8 format, otherwise the script won't be able to load the file. Also, make sure you delete any degrees symbol.

Set parameters

In the top of the script there are some parametrs you need to set:

• PLAIT_PATH= The plait file path. Example='data/plait2.csv'
• INPUT_PATH = The input file path. Example='data/input.csv'
• OUTPUT_PATH = The output folder path. Example='output/'
• DATA_COL_START = The column the input starts from to start in input. Example = 3
• REMOVEABLE_CHARS = Chars to remove in plait mapping. Example = ['%']
• LUM_START = Row that the lum section start. Example = 101
• OD_START = Row that the od section. Example= 48 start
• SAMPLES = Amount of samples in the input at each section. Example = 49
• GRAPH_NAME = Title of graph for each graph. Example= {'od': 'OD', 'lum': 'LUM', 'lum_div_od': 'LUM/OD'}
• GRAPH_YLABEL = Y label of each graph. Example = {'od': 'OD', 'lum': 'LUM (RLU)', 'lum_div_od': 'LUM/OD'} #

Run

Just run the script. Enjoy :)

Support

Feel free to reach out for help- oferezr@gmail.com