Extending Nobrainer and neuronets org - deep learning MR models

[satra]

Extending Nobrainer - a deep learning framework for neuroimaging

Project Description

Nobrainer is a tensorflow 2.0 based framework for creating and distributing neural network models for MR image processing. The goal of this project is to discuss the structure of Nobrainer and to make it easy for people to create and publish reusable models. Some of the recent work has focused on generative models for MR.

Skills required to participate

• Python
• Tensorflow 2.0 (Keras layers)
• MR image processing

Integration

How would your project integrate a neuroimager/clinician/psychologist/computational scientist/maker/artist as collaborator?

We would love for individuals to post issues describing use cases, feature requests, and contribute code or new models to the project.

Try to define intermediate goals (milestones).

• Increase trained models provided by nobrainer
• Increase baseline architectures available
• Provide model comparison

Preparation material

In addition to the code repo, these notebooks are intended to help guide individuals:

https://github.com/neuronets/nobrainer#guide-jupyter-notebooks-

Link to your GitHub repo

https://github.com/neuronets

Communication

Issues on github repo

[jvohryzek]

Hello Satra,

Are you still meeting anywhere to discuss the project?

[satra]

@jvohryzek - i'm outside location 2 in the main hallway of the hotel - but we are a little stuck on a separate discussion. this may take another 20 mins.

[jvohryzek]

Cool. Take your time. I am in the main room of Una hotel.

[josepman]

Hi! I am intested as well, but I am in Mercato Centrale location.
Are you going to the dinner tonight?

[satra]

@josepmsn - how about we meet tomorrow morning - that way we can identify a time and location for this and any interested parties.

[josepman]

@satra Great, let me know (also by mattermost)!

[jvohryzek]

yeas great with me as well!

[kaczmarj]

can you please post updates or a pointer to updates here?

[satra]

@jvohryzek @josepman - my plan is to be at the university location tomorrow. if you are up for it we can meet there at 10am. i'll also post on mattermost.

[satra]

feel free to ping anyone else interested.

[jvohryzek]

@satra is it the venue where traintrack takes place?

[satra]

It's the third venue. At sapienza

…

On Fri, Jun 7, 2019, 9:36 AM jvohryzek ***@***.***> wrote: @satra <https://github.com/satra> is it the venue where traintrack takes place? — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#79?email_source=notifications&email_token=AABM573QMJEPZC666VFSXD3PZIFZTA5CNFSM4HTS2JJ2YY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGODXFCWPY#issuecomment-499788607>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AABM572PG4UT32D2IRXN3Y3PZIFZTANCNFSM4HTS2JJQ> .

[josepman]

Oh sorry, I've just seen this. I am going to the train track venue today, but I can move easily to the Mercato Centrale as well. Next days I could do it better :)

[satra]

i'm back at the train track venue if people want to chat later today - say 4pm.

[josepman]

I was already in Mercato Centrale.
Someone around here? If not, can we fix something for tomorrow maybe?