About

Snakemake workflow to run mOTUs profiling on multiple samples.

Setup

Conda

How to install Miniconda

Create the main conda environment with snakemake (and some other dependencies):

conda env create -f requirements.yaml -n <env name>

Run workflow after setting configs:

snakemake --profile profiles/motus/

Project structure

TODO

Expected output

TODO

Workflows

TODO