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Python interface for calling the C++ code #14

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Python interface for calling the C++ code #14

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Commits on Nov 7, 2023

  1. Compile all possible variants

    @misharash
    misharash committed Nov 7, 2023
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Commits on Nov 8, 2023

  1. Started planning a Python interface

    @misharash
    misharash committed Nov 8, 2023
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  2. Created/deleted dirs in Makefile 

    and other minor fixes
    @misharash
    misharash committed Nov 8, 2023
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  3. Shortened repetitions in Makefile

    @misharash
    misharash committed Nov 8, 2023
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  4. More interface clarifications & warnings

    @misharash
    misharash committed Nov 8, 2023
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  5. Added xi_cut explanation for the interface

    @misharash
    misharash committed Nov 8, 2023
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Commits on Nov 9, 2023

  1. Continued interface planning and explanations

    @misharash
    misharash committed Nov 9, 2023
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  2. Renamed modes/variants 

    Hopefully they are clearer now
    @misharash
    misharash committed Nov 9, 2023
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  3. Updated counts explanations

    @misharash
    misharash committed Nov 9, 2023
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Commits on Nov 16, 2023

  1. Moved unused scripts to legacy folder

    @misharash
    misharash committed Nov 16, 2023
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  2. Refactored non-legacy scripts

    @misharash
    misharash committed Nov 16, 2023
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  3. Retired one more script

    @misharash
    misharash committed Nov 16, 2023
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  4. Merge branch 'compat'

    @misharash
    misharash committed Nov 16, 2023
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  5. Additional refactoring in convert_to_xyz

    @misharash
    misharash committed Nov 16, 2023
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Commits on Nov 17, 2023

  1. Partial scripts bump from desi branch

    @misharash
    misharash committed Nov 17, 2023
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Commits on Nov 23, 2023

  1. Script to collect C++ code output from text files

    @misharash
    misharash committed Nov 23, 2023
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  2. Merge branch 'compat'

    @misharash
    misharash committed Nov 23, 2023
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  3. Refactored the simpler post-processing scripts

    @misharash
    misharash committed Nov 23, 2023
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  4. Unified the load_raw_covariances functions

    @misharash
    misharash committed Nov 23, 2023
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Commits on Nov 24, 2023

  1. New, simplified catenation script

    @misharash
    misharash committed Nov 24, 2023
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  2. Refactored Legendre jackknife post-processing 

    Also changed the logic a bit in ordinary jackknife
    @misharash
    misharash committed Nov 24, 2023
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  3. Another small fix in jackknife logic

    @misharash
    misharash committed Nov 24, 2023
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  4. Supplemented type annotation for matrix loading

    @misharash
    misharash committed Nov 24, 2023
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  5. Small fix in weight normalization

    @misharash
    misharash committed Nov 24, 2023
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  6. Refactored single-tracer matrix loading 

    Centralized c2 diagonalization
Combined two loading functions to one
    @misharash
    misharash committed Nov 24, 2023
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Commits on Nov 25, 2023

  1. Renamed cov construction function and fixed usage

    @misharash
    misharash committed Nov 25, 2023
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  2. Refactored default multi-tracer post-processing

    @misharash
    misharash committed Nov 25, 2023
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  3. Fixed and restructured default multi post-process

    @misharash
    misharash committed Nov 25, 2023
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  4. Moved multi-field utility functions

    @misharash
    misharash committed Nov 25, 2023
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  5. Refactored Legendre multi post-process

    @misharash
    misharash committed Nov 25, 2023
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  6. More massaging of multi-tracer utilities

    @misharash
    misharash committed Nov 25, 2023
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  7. Refactored default multi mock post-processing

    @misharash
    misharash committed Nov 25, 2023
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  8. Cosmetic edits in multi post-processings

    @misharash
    misharash committed Nov 25, 2023
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  9. Shortened single-field c234 loading

    @misharash
    misharash committed Nov 25, 2023
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  10. Revisited s, mu jack post-process 

    Possibly fixed an error in disconnected term computation
    @misharash
    misharash committed Nov 25, 2023
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  11. Revisited mixed Legendre jack post-process

    @misharash
    misharash committed Nov 25, 2023
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  12. Fixes in multi-tracer matrix loading

    @misharash
    misharash committed Nov 25, 2023
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  13. Refactored multi-tracer jack post-process

    @misharash
    misharash committed Nov 25, 2023
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  14. Changed some operations with map

    @misharash
    misharash committed Nov 25, 2023
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  15. Retired the old catenation script

    @misharash
    misharash committed Nov 25, 2023
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  16. Merge branch 'compat'

    @misharash
    misharash committed Nov 25, 2023
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Commits on Nov 26, 2023

  1. Hopefully final scripts bump from desi branch

    @misharash
    misharash committed Nov 26, 2023
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Commits on Nov 27, 2023

  1. Fixed imports and tuple typing

    @misharash
    misharash committed Nov 27, 2023
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  2. Fixed the correction function scripts

    @misharash
    misharash committed Nov 27, 2023
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  3. Merge branch 'master' into interface

    @misharash
    misharash committed Nov 27, 2023
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  4. Restructured the extra convergence check

    @misharash
    misharash committed Nov 27, 2023
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  5. Type annotations for mu bin Legendre factors

    @misharash
    misharash committed Nov 27, 2023
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  6. Working on the interface implementation 

    Left to write the input files for the C++ code
    @misharash
    misharash committed Nov 27, 2023
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Commits on Nov 28, 2023

  1. Finished rough implementation of the interface

    @misharash
    misharash committed Nov 28, 2023
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  2. Implemented xi refinement logic

    @misharash
    misharash committed Nov 28, 2023
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Commits on Nov 29, 2023

  1. Resolved the s_edges redundancy

    @misharash
    misharash committed Nov 29, 2023
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  2. More explanations on covariance/counts binning

    @misharash
    misharash committed Nov 29, 2023
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  3. Moved interface and full set of executables

    @misharash
    misharash committed Nov 29, 2023
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  4. Merge branch 'interface'

    @misharash
    misharash committed Nov 29, 2023
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  5. Ignore the executable variants in git

    @misharash
    misharash committed Nov 29, 2023
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Commits on Dec 4, 2023

  1. Post-processing fixes and improvements

    @misharash
    misharash committed Dec 4, 2023
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Commits on Dec 6, 2023

  1. Further fixes

    @misharash
    misharash committed Dec 6, 2023
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  2. Restructured cov conversion scripts

    @misharash
    misharash committed Dec 6, 2023
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Commits on Dec 7, 2023

  1. Merge branch 'oliverphilcox:master' into master

    @misharash
    misharash committed Dec 7, 2023
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  2. Correction in reported configuration counts

    @misharash
    misharash committed Dec 7, 2023
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  3. Provided reference for expected runtime

    @misharash
    misharash committed Dec 7, 2023
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  4. Expanded the runtime note

    @misharash
    misharash committed Dec 7, 2023
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  5. Explained the returned value in the interface

    @misharash
    misharash committed Dec 7, 2023
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Commits on Dec 11, 2023

  1. Featured interface in README

    @misharash
    misharash committed Dec 11, 2023
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Commits on Dec 13, 2023

  1. Fixes and restructuring

    @misharash
    misharash committed Dec 13, 2023
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Commits on Dec 24, 2023

  1. Fixes in raw covariance matrix collection

    @misharash
    misharash committed Dec 24, 2023
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  2. Fix in convert_cov scripts

    @misharash
    misharash committed Dec 24, 2023
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  3. Separated the library and made scripts executable

    @misharash
    misharash committed Dec 24, 2023
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  4. Updated paths in the docs

    @misharash
    misharash committed Dec 24, 2023
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Commits on Dec 26, 2023

  1. Merge branch 'oliverphilcox:master' into master

    @misharash
    misharash committed Dec 26, 2023
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Commits on Jan 10, 2024

  1. Fixes in Legendre multi to cat comb function

    @misharash
    misharash committed Jan 10, 2024
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Commits on Jan 11, 2024

  1. Reorganized flags in the Makefile

    @misharash
    misharash committed Jan 11, 2024
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Commits on Jan 12, 2024

  1. Added diagnostics for xi rescaling

    @misharash
    misharash committed Jan 12, 2024
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Commits on Jan 13, 2024

  1. Fixes for xi rescaling diagnostics

    @misharash
    misharash committed Jan 13, 2024
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  2. Another diagnostic for xi rescaling

    @misharash
    misharash committed Jan 13, 2024
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  3. Deleted unused source file

    @misharash
    misharash committed Jan 13, 2024
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  4. Multi-tracer post-processing fix

    @misharash
    misharash committed Jan 13, 2024
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  5. Changed small particle separation logic

    @misharash
    misharash committed Jan 13, 2024
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  6. More fixes for multi-tracer post-processing

    @misharash
    misharash committed Jan 13, 2024
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  7. Inserted endline for xi rescaling diagnostics

    @misharash
    misharash committed Jan 13, 2024
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Commits on Jan 17, 2024

  1. Files from manodeep/Makefile-C-Python

    @misharash
    misharash committed Jan 17, 2024
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Commits on Jan 18, 2024

  1. Renamed the imported license file

    @misharash
    misharash committed Jan 18, 2024
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Commits on Jan 22, 2024

  1. Legendre mocks post-processing fix

    @misharash
    misharash committed Jan 22, 2024
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Commits on Feb 4, 2024

  1. Python package init file

    @misharash
    misharash committed Feb 4, 2024
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  2. Minimal working setup

    @misharash
    misharash committed Feb 4, 2024
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  3. Ignore the package build files

    @misharash
    misharash committed Feb 4, 2024
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  4. Merge branch 'python_setup'

    @misharash
    misharash committed Feb 4, 2024
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  5. Small clarification for interface output

    @misharash
    misharash committed Feb 4, 2024
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  6. Cleanup and corrections in setup script

    @misharash
    misharash committed Feb 4, 2024
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Commits on Feb 6, 2024

  1. Minimal python interface explanations in README

    @misharash
    misharash committed Feb 6, 2024
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  2. NERSC installation instruction

    @misharash
    misharash committed Feb 6, 2024
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  3. Corrections about installation

    @misharash
    misharash committed Feb 6, 2024
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  4. Note about the multi-threading precaution

    @misharash
    misharash committed Feb 6, 2024
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  5. Another small fix in README

    @misharash
    misharash committed Feb 6, 2024
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  6. Added mode printouts in the interface

    @misharash
    misharash committed Feb 6, 2024
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  7. Added progress and time messages in the interface

    @misharash
    misharash committed Feb 6, 2024
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  8. Updated the run time explanation

    @misharash
    misharash committed Feb 6, 2024
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  9. More diagnostic information in the interface

    @misharash
    misharash committed Feb 6, 2024
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  10. Moved the binning info to the output dir 

    Could be worth checking afterwards
    @misharash
    misharash committed Feb 6, 2024
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  11. More explanations on the files/directories

    @misharash
    misharash committed Feb 6, 2024
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  12. Fixes for installation instructions

    @misharash
    misharash committed Feb 6, 2024
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Commits on Feb 9, 2024

  1. Multi-threading fix and warning

    @misharash
    misharash committed Feb 9, 2024
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Commits on Feb 11, 2024

  1. Slash-safe output dir in the C++ code

    @misharash
    misharash committed Feb 11, 2024
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  2. Removed the filename length limits 

    from the active part of the code
    @misharash
    misharash committed Feb 11, 2024
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  3. Fixed uint64 format warning on Linux 

    It should not have been there, but it was
    @misharash
    misharash committed Feb 11, 2024
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Commits on Feb 12, 2024

  1. Accumulated fixes for the interface

    @misharash
    misharash committed Feb 12, 2024
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Commits on Feb 13, 2024

  1. Added extra convergence check into the interface

    @misharash
    misharash committed Feb 13, 2024
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Commits on Feb 14, 2024

  1. Added reference to script gallery

    @misharash
    misharash committed Feb 14, 2024
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Commits on Feb 18, 2024

  1. Removed unused import

    @misharash
    misharash committed Feb 18, 2024
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  2. Included coordinate conversion in the interface

    @misharash
    misharash committed Feb 18, 2024
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  3. Made jackknife number format more flexible

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    misharash committed Feb 18, 2024
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  4. Ensured consistency of jackknife numbers

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    misharash committed Feb 18, 2024
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  5. Added dtype for coordinate conversion

    @misharash
    misharash committed Feb 18, 2024
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Commits on Feb 19, 2024

  1. Fix in combine_covs scripts

    @misharash
    misharash committed Feb 19, 2024
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Commits on Feb 20, 2024

  1. Fixes in the raw covariance matrix catenation

    @misharash
    misharash committed Feb 20, 2024
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Commits on Feb 21, 2024

  1. More minimal compilation setup on Mac

    @misharash
    misharash committed Feb 21, 2024
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Commits on Feb 22, 2024

  1. Merge branch 'oliverphilcox:master' into master

    @misharash
    misharash committed Feb 22, 2024
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Commits on Feb 23, 2024

  1. Allowed already wrapped estimators in pycorr reshaping

    @misharash
    misharash committed Feb 23, 2024
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  2. Optimized memory usage in pycorr sample covs

    @misharash
    misharash committed Feb 23, 2024
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Commits on Mar 8, 2024

  1. Recovered counts renormalization in combine_covs

    @misharash
    misharash committed Mar 8, 2024
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Commits on Mar 22, 2024

  1. Only positive shot-noise rescaling to optimize

    @misharash
    misharash committed Mar 22, 2024
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Commits on Apr 30, 2024

  1. Ensured single-threaded jackknife assignment 

    Because multi-threading in it is known to interfere with RascalC
    @misharash
    misharash committed Apr 30, 2024
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  2. position_type argument for xirunpc subsampler

    @misharash
    misharash committed Apr 30, 2024
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  3. Separated the comoving distance calculation

    @misharash
    misharash committed Apr 30, 2024
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  4. Extra measure for single-threaded jack assignment

    @misharash
    misharash committed Apr 30, 2024
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Commits on May 1, 2024

  1. Enabled additional verbosity on progress 

    by building additional verbose executable versions
    @misharash
    misharash committed May 1, 2024
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  2. Fix for the verbose executable variants

    @misharash
    misharash committed May 1, 2024
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  3. Tutorial notebook (not finalized) 

    The covariance has not converged + some extra variants not cleaned up
    @misharash
    misharash committed May 1, 2024
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  4. Linked the tutorial notebook to README

    @misharash
    misharash committed May 1, 2024
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Commits on May 2, 2024

  1. Some more details for the tutorial

    @misharash
    misharash committed May 2, 2024
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  2. More info on installation and dependencies 

    Thanks to Jiaxi Yu for pointing this out
    @misharash
    misharash committed May 2, 2024
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  3. A few fixes in README

    @misharash
    misharash committed May 2, 2024
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  4. Re-framed the Corrfunc version reminder

    @misharash
    misharash committed May 2, 2024
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  5. Fixed the spelling of jackknife in plural

    @misharash
    misharash committed May 2, 2024
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  6. Option to run more reproducibly with a fixed seed

    @misharash
    misharash committed May 2, 2024
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Commits on May 9, 2024

  1. Propagated the RNG setup to 2PCF rescaling

    @misharash
    misharash committed May 9, 2024
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  2. Small fix for OpenMP pragma

    @misharash
    misharash committed May 9, 2024
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  3. Fixed compilation for 3PCF mode

    @misharash
    misharash committed May 9, 2024
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  4. Eliminated sprintf/snprintf for 3PCF

    @misharash
    misharash committed May 9, 2024
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  5. Fixed triple_counts

    @misharash
    misharash committed May 9, 2024
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  6. Propagated the RNG setup everywhere

    @misharash
    misharash committed May 9, 2024
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  7. Reset the mode back to Legendre mix jackknife

    @misharash
    misharash committed May 9, 2024
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Commits on May 27, 2024

  1. Added DESI NERSC setup guide to tutorial

    @misharash
    misharash committed May 27, 2024
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Commits on May 29, 2024

  1. Sample selection for raw cov loading/post-process

    @misharash
    misharash committed May 29, 2024
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  2. Fixed logic and type checks/annotations

    @misharash
    misharash committed May 29, 2024
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Commits on May 30, 2024

  1. Fix for the raw covs cutting

    @misharash
    misharash committed May 30, 2024
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Commits on Jun 22, 2024

  1. Fixed disappearing warnings in the tutorial

    @misharash
    misharash committed Jun 22, 2024
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Commits on Jun 24, 2024

  1. Warning about directory paths

    @misharash
    misharash committed Jun 24, 2024
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  2. Clean up the temporary files in the interface

    @misharash
    misharash committed Jun 24, 2024
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  3. Documented part of the utility functions

    @misharash
    misharash committed Jun 24, 2024
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  4. Fixed and reorganized the correction functions

    @misharash
    misharash committed Jun 24, 2024
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Commits on Jun 25, 2024

  1. Small fix of particles' reading logic

    @misharash
    misharash committed Jun 25, 2024
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Commits on Jun 26, 2024

  1. Extra precaution in the tutorial's tricky part

    @misharash
    misharash committed Jun 26, 2024
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