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Merge pull request #1204 from rleigh-dundee/cpp-pixeldata
cpp: Add PixelBuffer<> and VariantPixelBuffer
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,139 @@ | ||
| /* | ||
| * #%L | ||
| * OME-BIOFORMATS C++ library for image IO. | ||
| * Copyright © 2006 - 2014 Open Microscopy Environment: | ||
| * - Massachusetts Institute of Technology | ||
| * - National Institutes of Health | ||
| * - University of Dundee | ||
| * - Board of Regents of the University of Wisconsin-Madison | ||
| * - Glencoe Software, Inc. | ||
| * %% | ||
| * Redistribution and use in source and binary forms, with or without | ||
| * modification, are permitted provided that the following conditions are met: | ||
| * | ||
| * 1. Redistributions of source code must retain the above copyright notice, | ||
| * this list of conditions and the following disclaimer. | ||
| * 2. Redistributions in binary form must reproduce the above copyright notice, | ||
| * this list of conditions and the following disclaimer in the documentation | ||
| * and/or other materials provided with the distribution. | ||
| * | ||
| * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" | ||
| * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE | ||
| * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE | ||
| * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE | ||
| * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR | ||
| * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF | ||
| * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS | ||
| * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN | ||
| * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) | ||
| * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE | ||
| * POSSIBILITY OF SUCH DAMAGE. | ||
| * | ||
| * The views and conclusions contained in the software and documentation are | ||
| * those of the authors and should not be interpreted as representing official | ||
| * policies, either expressed or implied, of any organization. | ||
| * #L% | ||
| */ | ||
|
|
||
| #include <ome/bioformats/PixelBuffer.h> | ||
|
|
||
| namespace ome | ||
| { | ||
| namespace bioformats | ||
| { | ||
|
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| // No switch default to avoid -Wunreachable-code errors. | ||
| // However, this then makes -Wswitch-default complain. Disable | ||
| // temporarily. | ||
| #ifdef __GNUC__ | ||
| # pragma GCC diagnostic push | ||
| # pragma GCC diagnostic ignored "-Wswitch-default" | ||
| #endif | ||
|
|
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| PixelBufferBase::storage_order_type | ||
| PixelBufferBase::make_storage_order(ome::xml::model::enums::DimensionOrder order, | ||
| bool interleaved) | ||
| { | ||
| size_type ordering[dimensions]; | ||
| bool ascending[dimensions] = {true, true, true, true, true, true, true, true, true}; | ||
|
|
||
| if (interleaved) | ||
| { | ||
| ordering[0] = DIM_SUBCHANNEL; | ||
| ordering[1] = DIM_SPATIAL_X; | ||
| ordering[2] = DIM_SPATIAL_Y; | ||
| } | ||
| else | ||
| { | ||
| ordering[0] = DIM_SPATIAL_X; | ||
| ordering[1] = DIM_SPATIAL_Y; | ||
| ordering[2] = DIM_SUBCHANNEL; | ||
| } | ||
|
|
||
| switch(order) | ||
| { | ||
| case ome::xml::model::enums::DimensionOrder::XYZTC: | ||
| ordering[3] = DIM_MODULO_Z; | ||
| ordering[4] = DIM_SPATIAL_Z; | ||
| ordering[5] = DIM_MODULO_T; | ||
| ordering[6] = DIM_TEMPORAL_T; | ||
| ordering[7] = DIM_MODULO_C; | ||
| ordering[8] = DIM_CHANNEL; | ||
| break; | ||
| case ome::xml::model::enums::DimensionOrder::XYZCT: | ||
| ordering[3] = DIM_MODULO_Z; | ||
| ordering[4] = DIM_SPATIAL_Z; | ||
| ordering[5] = DIM_MODULO_C; | ||
| ordering[6] = DIM_CHANNEL; | ||
| ordering[7] = DIM_MODULO_T; | ||
| ordering[8] = DIM_TEMPORAL_T; | ||
| break; | ||
| case ome::xml::model::enums::DimensionOrder::XYTZC: | ||
| ordering[3] = DIM_MODULO_T; | ||
| ordering[4] = DIM_TEMPORAL_T; | ||
| ordering[5] = DIM_MODULO_Z; | ||
| ordering[6] = DIM_SPATIAL_Z; | ||
| ordering[7] = DIM_MODULO_C; | ||
| ordering[8] = DIM_CHANNEL; | ||
| break; | ||
| case ome::xml::model::enums::DimensionOrder::XYTCZ: | ||
| ordering[3] = DIM_MODULO_T; | ||
| ordering[4] = DIM_TEMPORAL_T; | ||
| ordering[5] = DIM_MODULO_C; | ||
| ordering[6] = DIM_CHANNEL; | ||
| ordering[7] = DIM_MODULO_Z; | ||
| ordering[8] = DIM_SPATIAL_Z; | ||
| break; | ||
| case ome::xml::model::enums::DimensionOrder::XYCZT: | ||
| ordering[3] = DIM_MODULO_C; | ||
| ordering[4] = DIM_CHANNEL; | ||
| ordering[5] = DIM_MODULO_Z; | ||
| ordering[6] = DIM_SPATIAL_Z; | ||
| ordering[7] = DIM_MODULO_T; | ||
| ordering[8] = DIM_TEMPORAL_T; | ||
| break; | ||
| case ome::xml::model::enums::DimensionOrder::XYCTZ: | ||
| ordering[3] = DIM_MODULO_C; | ||
| ordering[4] = DIM_CHANNEL; | ||
| ordering[5] = DIM_MODULO_T; | ||
| ordering[6] = DIM_TEMPORAL_T; | ||
| ordering[7] = DIM_MODULO_Z; | ||
| ordering[8] = DIM_SPATIAL_Z; | ||
| break; | ||
| } | ||
|
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| return storage_order_type(ordering, ascending); | ||
| } | ||
|
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| #ifdef __GNUC__ | ||
| # pragma GCC diagnostic pop | ||
| #endif | ||
|
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| PixelBufferBase::storage_order_type | ||
| PixelBufferBase::default_storage_order() | ||
| { | ||
| return make_storage_order(ome::xml::model::enums::DimensionOrder::XYZTC, true); | ||
| } | ||
|
|
||
| } | ||
| } |
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