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CV7000: unexpected offset when reading plates with missing wells #4005

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sbesson opened this issue May 15, 2023 · 2 comments
Closed

CV7000: unexpected offset when reading plates with missing wells #4005

sbesson opened this issue May 15, 2023 · 2 comments
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bug Something isn't working reader:CV7000

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@sbesson
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sbesson commented May 15, 2023

See https://forum.image.sc/t/different-images-between-a-downloaded-one-and-whats-shown-in-the-idr-preview/81164

Looking at an example plate currently published in IDR

Screenshot 2023-05-15 at 16 02 47

There are no TIFF files corresponding to the wells C11 up to C14 on disk. Although the reader detects these wells as empty and does not populate them in the metadata, there is an issue in the way openBytes accesses the data. This result in wells C15 to C18 appearing as black, well C19 displaying the data of well C15 etc
@sbesson sbesson added the bug Something isn't working label May 15, 2023
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This issue has been mentioned on Image.sc Forum. There might be relevant details there:

https://forum.image.sc/t/different-images-between-a-downloaded-one-and-whats-shown-in-the-idr-preview/81164/2

melissalinkert added a commit to melissalinkert/bioformats that referenced this issue May 15, 2023
@melissalinkert
CV7000: handle case where wells are recorded, but all files were removed
bea3294 
See ome#4005.
@melissalinkert melissalinkert mentioned this issue May 15, 2023
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sbesson pushed a commit to sbesson/bioformats that referenced this issue May 19, 2023
@melissalinkert @sbesson
CV7000: handle case where wells are recorded, but all files were removed
af5af0f 
See ome#4005.
@sbesson
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sbesson commented Nov 22, 2023

Closing as this was fixed in #4006

@sbesson sbesson closed this as completed Nov 22, 2023
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