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ImageJ: fix display of composite virtual stacks #1774

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merged 3 commits into from
May 6, 2015
Merged

ImageJ: fix display of composite virtual stacks #1774

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c9bb5b4
Update commited ImageJ jar to 1.48s
melissalinkert Apr 29, 2015
f3a20d6
ImageJ: propagate min/max display values to all channels by default
melissalinkert Apr 29, 2015
819a947
Make sure that the original channel position is correctly reset
melissalinkert May 5, 2015
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22 changes: 22 additions & 0 deletions components/bio-formats-plugins/src/loci/plugins/in/Colorizer.java
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Original file line number Diff line number Diff line change
Expand Up @@ -171,6 +171,28 @@ public void close() {
super.close();
toClose.close();
}

@Override
public void show(String message) {
super.show(message);

// ensure that the display settings are consistent across channels
// autoscaling takes care of this for non-virtual stacks
// see ticket #12267
if (toClose instanceof VirtualImagePlus) {
int channel = getChannel();
double min = getDisplayRangeMin();
double max = getDisplayRangeMax();

for (int c=0; c<cSize; c++) {
setPositionWithoutUpdate(c + 1, getSlice(), getFrame());
setDisplayRange(min, max);
}
reset();
setPosition(channel, getSlice(), getFrame());
}
}

};
compImage.setProperty(ImagePlusReader.PROP_SERIES, series);
if (luts != null) compImage.setLuts(luts);
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