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Coordinate transforms json-schema (request for feedback) #149

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Coordinate transforms json-schema (request for feedback) #149

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Commits on Feb 1, 2022

  1. start of named space and transform metadata

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Commits on Feb 9, 2022

  1. fwd and inv coordinate transforms

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  2. Merge remote-tracking branch 'upstream/main' into coord-transforms 

    # Conflicts:
#	latest/index.bs
    @bogovicj
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  3. more transform details 

    * define pixel center coordinate system
* add input/output_axes
* add transform inverse flag
* add affine transform type
    @bogovicj
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  4. start page on details and recommendations

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Commits on May 5, 2022

  1. transformation progress 

    * flesh out array space
* define array indexing
* add more transformation types
* start transformation details section and examples
* update example
    @bogovicj
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Commits on May 9, 2022

  1. change fields to camelCase

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Commits on May 12, 2022

  1. add details for coordinate and displacement fields

    @bogovicj
    bogovicj committed May 12, 2022
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Commits on May 13, 2022

  1. add details on dimension order

    @bogovicj
    bogovicj committed May 13, 2022
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  2. clean up array indexing section

    @bogovicj
    bogovicj committed May 13, 2022
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Commits on May 15, 2022

  1. add more details for scale, translation, displacement

    @bogovicj
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Commits on May 16, 2022

  1. merge and cleanup

    @bogovicj
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Commits on May 24, 2022

  1. Merge remote-tracking branch 'upstream/main' into coord-transforms 

    # Conflicts:
#	latest/index.bs
    @bogovicj
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Commits on Jun 1, 2022

  1. clarify input and output dimensionality for transforms 

    * use "input" and "output" rather than '*Space' and '*Axes'
    @bogovicj
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Commits on Jun 3, 2022

  1. update to transformations 

    * reorder details
* clean up table
* add rotation
* details for sequence
* describe inverses
* wrap examples
    @bogovicj
    bogovicj committed Jun 3, 2022
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  2. rotation transformation details 

    * rephrase matrix storage
    bogovicj committed Jun 3, 2022
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  3. minor rephrase intro to coordinateTransformations section

    bogovicj committed Jun 3, 2022
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Commits on Jun 6, 2022

  1. add details for bijection ct 

    * change to "coordinates", removing "Field"
* change to "displacements", removing "Field"
    @bogovicj
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Commits on Jun 9, 2022

  1. big changes to transformations spec 

    * add details for transformation types
* (identity, inverseOf, bijection)
* describe inputAxes and outputAxes
* add new examples
    @bogovicj
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Commits on Sep 6, 2022

  1. Add "coordinateSystems" and "coordinateTransformations" fields for ex… 

    …amples

* some clean up
    @bogovicj
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Commits on Sep 7, 2022

  1. coordinate transformation updates: 

    * add mapIndex, mapAXis
* add examples
* affine stored as flat array only
    @bogovicj
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Commits on Sep 11, 2022

  1. update multiscales_example

    @bogovicj
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  2. rename dimensionWise byDimension 

    * sequence does not have by-dimension behavior
    @bogovicj
    bogovicj committed Sep 11, 2022
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  3. add more transformation examples

    @bogovicj
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  4. byDimension examples, rm input/outputAxes fields

    @bogovicj
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Commits on Sep 15, 2022

  1. reorder, simplify sections. 

    * flesh out some examples
    bogovicj committed Sep 15, 2022
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  2. clean up example formatting

    bogovicj committed Sep 15, 2022
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Commits on Sep 16, 2022

  1. add array coordinate system example

    bogovicj committed Sep 16, 2022
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Commits on Sep 23, 2022

  1. rm duplicate editor names, typo fix

    @bogovicj
    bogovicj committed Sep 23, 2022
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  2. fix sequence example json. add inverseOf to input/output field exception

    bogovicj committed Sep 23, 2022
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  3. be clearer re: half-open interval

    bogovicj committed Sep 23, 2022
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Commits on Oct 4, 2022

  1. move axes section into coordinateSystems section

    @bogovicj
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  2. typo fixes

    @bogovicj
    bogovicj committed Oct 4, 2022
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  3. Merge branch 'coord-transforms' of github.com:bogovicj/ngff into coor… 

    …d-transforms

# Conflicts:
#	latest/index.bs
    @bogovicj
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  4. add two new coordinate transformation examples 

    * multiscales dataset-level
* xarray like coordinates / byDimension
    @bogovicj
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  5. Allow tests to access all schemas

    @ivirshup
    ivirshup committed Oct 4, 2022
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  6. Fix how schemas are matched to examples

    @ivirshup
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  7. Add initial coordinate system schemas

    @ivirshup
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  8. Add array coordinate schema

    @ivirshup
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  9. Add test for array coordinate system

    @ivirshup
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  10. Stop adding cases for .config files

    @ivirshup
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Commits on Oct 5, 2022

  1. describe where to store coordinateTransformations

    @bogovicj
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  2. corrections for coordinates and displacements

    @bogovicj
    bogovicj committed Oct 5, 2022
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Commits on Oct 6, 2022

  1. add optional "longName" field for axes 

    see ome#142
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Commits on Oct 9, 2022

  1. Merge branch 'coord-transforms' into coord-transforms-schemas

    @ivirshup
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  2. Add longName property to axes schema

    @ivirshup
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  3. Add mapAxis and mapIndex schemas

    @ivirshup
    ivirshup committed Oct 9, 2022
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  4. Add affine transfrom, use reference for path_w_url

    @ivirshup
    ivirshup committed Oct 9, 2022
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  5. Move rotation example to example directory

    @ivirshup
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  6. Add schema for rotation

    @ivirshup
    ivirshup committed Oct 9, 2022
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  7. Move inverseOf example to examples directory

    @ivirshup
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  8. Added schema for inverseOf 

    Note that the test currently does not pass because displacements have not been defined yet.
    @ivirshup
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  9. Added byDimension transformation 

    The tests mark invalid pass because we would need dynamic validation to check whether the axes were present in the coordinate spaces.
    @ivirshup
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  10. Sequence schemas

    @ivirshup
    ivirshup committed Oct 9, 2022
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Commits on Oct 12, 2022

  1. Merge remote-tracking branch 'upstream/main' into coord-transforms 

    # Conflicts:
#	latest/index.bs
    @bogovicj
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  2. Merge branch 'coord-transforms' into coord-transforms-schemas 

    Now that main has been merged into coord-transforms
    @ivirshup
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