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Use correct dimension_separator when downsampling #144

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will-moore
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@will-moore will-moore commented May 19, 2023

I noticed that a bug introduced in #134
When creating pyramids with downsample_pyramid_on_disk() the da.to_zarr() doesn't respect dimension separator.

For example of data exported with this issue: see https://ome.github.io/ome-ngff-validator/?source=https://uk1s3.embassy.ebi.ac.uk/idr0036/zarr/4403.zarr/A/1/0/

Fix is similar to ome/ome-zarr-py#243

To test:

$ omero zarr export Image:123

check that array at 123.zarr/1/ has dimension separator /

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👍 for this being similar to https://github.com/ome/ome-zarr-py/pull/243/files (modulo the addition of str(path))

I do wonder if there's anywhere else that this could have cropped up.

@will-moore will-moore merged commit b3b3939 into ome:master May 22, 2023
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@will-moore
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Fix released in omero-cli-zarr 0.5.3

@dominikl
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👍 Shall I export idr0036 with this fix again?

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3 participants