Merge pull request #30 from jburel/screenshot

Screenshot
ome · May 13, 2021 · 57cfae0 · 57cfae0
2 parents 230958c + 526c391
commit 57cfae0
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Showing 5 changed files with 23 additions and 1 deletion.
diff --git a/binder/environment.yml b/binder/environment.yml
@@ -4,10 +4,11 @@ channels:
   - ilastik-forge
   - ome
 dependencies:
-  - numba==0.48.0
+  #- numba==0.48.0
   - omero-py  # ome
   - pip
   - ipywidgets
+  - tornado<6
   # ilastik
   # see https://github.com/h5py/h5py/issues/1880
   - h5py<3.2

diff --git a/notebooks/idr0062_pixel_classification_zarr.ipynb b/notebooks/idr0062_pixel_classification_zarr.ipynb
@@ -727,6 +727,13 @@
     "compare(first_channel, data[0, 0, :, :, :], shadow=False, gradient_opacity=0.2, ui_collapsed=True)"
    ]
   },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "![Compare](images/ilastik_1.png)"
+   ]
+  },
   {
    "cell_type": "markdown",
    "metadata": {},
@@ -762,6 +769,13 @@
     "compare(labels[0, 0, 2:, :, :], data[0, 0, 2:, :, :], shadow=False, gradient_opacity=0.2, ui_collapsed=True)"
    ]
   },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "![Compare_original](images/ilastik_2.png)"
+   ]
+  },
   {
    "cell_type": "markdown",
    "metadata": {},
@@ -802,6 +816,13 @@
     "viewer"
    ]
   },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "![Overlay](images/ilastik_3.png)"
+   ]
+  },
   {
    "cell_type": "markdown",
    "metadata": {

diff --git a/notebooks/images/ilastik_1.png b/notebooks/images/ilastik_1.png
diff --git a/notebooks/images/ilastik_2.png b/notebooks/images/ilastik_2.png
diff --git a/notebooks/images/ilastik_3.png b/notebooks/images/ilastik_3.png