Merge pull request #11 from jburel/zarr

Zarr
ome · Apr 28, 2020 · 9b91681 · 9b91681
2 parents 9bacbc3 + 13f6703
commit 9b91681
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Showing 6 changed files with 2,126 additions and 17 deletions.
diff --git a/binder/environment.yml b/binder/environment.yml
@@ -9,3 +9,8 @@ dependencies:
   - ilastik-dependencies-no-solvers
   - ilastik-meta
   - ipywidgets
+  - zarr  # for scripts reading from S3
+  - s3fs  # for scripts reading from S3
+  - dask  # for scripts reading from S3
+  - pip:
+    - itkwidgets==0.14.0
diff --git a/notebooks/pixel_classification.ipynb b/notebooks/pixel_classification.ipynb
@@ -35,9 +35,7 @@
     "from getpass import getpass\n",
     "from collections import OrderedDict\n",
     "\n",
-    "from collections import OrderedDict\n",
     "import ilastik_main\n",
-    "from ilastik.applets.dataSelection import DatasetInfo\n",
     "from ilastik.applets.dataSelection.opDataSelection import PreloadedArrayDatasetInfo\n",
     "import ipywidgets as widgets"
    ]
@@ -78,7 +76,8 @@
     "conn = BlitzGateway(input(\"Username: \"),\n",
     "                    getpass(\"OMERO Password: \"),\n",
     "                    host=HOST, secure=True)\n",
-    "conn.connect()"
+    "conn.connect()\n",
+    "conn.c.enableKeepAlive(60)"
    ]
   },
   {