Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

ROI service #4261

Merged
merged 1 commit into from
Oct 14, 2015
Merged

ROI service #4261

Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Jump to
Jump to file
Failed to load files.
Diff view
Diff view
14 changes: 13 additions & 1 deletion components/blitz/resources/omero/api/IRoi.ice
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -16,7 +16,7 @@
// -----------------------------
// Histograms
// Volumes, Velocities, Diffusions

["deprecated:IROI is deprecated."]
module omero {

module api {
Expand Down Expand Up @@ -134,6 +134,7 @@ module omero {
* All Shapes are loaded, as is the Pixels and Image object.
* TODO: Annotations?
**/
["deprecated:IROI is deprecated."]
idempotent
RoiResult findByRoi(long roiId, RoiOptions opts) throws omero::ServerError;

Expand All @@ -142,6 +143,7 @@ module omero {
*
* Loads Rois as findByRoi.
**/
["deprecated:IROI is deprecated."]
idempotent
RoiResult findByImage(long imageId, RoiOptions opts) throws omero::ServerError;

Expand All @@ -150,30 +152,35 @@ module omero {
*
* Loads Rois as findByRoi.
**/
["deprecated:IROI is deprecated."]
idempotent
RoiResult findByPlane(long imageId, int z, int t, RoiOptions opts) throws omero::ServerError;

/**
* Calculate the points contained within a given shape
**/
["deprecated:IROI is deprecated."]
idempotent
ShapePoints getPoints(long shapeId) throws omero::ServerError;

/**
* Calculate stats for all the shapes within the given Roi.
**/
["deprecated:IROI is deprecated."]
idempotent
RoiStats getRoiStats(long roiId) throws omero::ServerError;

/**
* Calculate the stats for the points within the given Shape.
**/
["deprecated:IROI is deprecated."]
idempotent
ShapeStats getShapeStats(long shapeId) throws omero::ServerError;

/**
* Calculate the stats for the points within the given Shapes.
**/
["deprecated:IROI is deprecated."]
idempotent
ShapeStatsList getShapeStatsList(LongList shapeIdList) throws omero::ServerError;

Expand All @@ -188,6 +195,7 @@ module omero {
*
* @param opts, userId and groupId are respected based on the ownership of the annotation.
**/
["deprecated:IROI is deprecated."]
idempotent
AnnotationList getRoiMeasurements(long imageId, RoiOptions opts) throws omero::ServerError;

Expand All @@ -197,6 +205,7 @@ module omero {
*
* @param annotationId if -1, logic is identical to findByImage(imageId, opts)
**/
["deprecated:IROI is deprecated."]
idempotent
RoiResult getMeasuredRois(long imageId, long annotationId, RoiOptions opts) throws omero::ServerError;

Expand All @@ -205,16 +214,19 @@ module omero {
* Logic is identical to getMeasuredRois, but Roi data will not be duplicated. (i.e.
* the objects are referentially identical)
**/
["deprecated:IROI is deprecated."]
idempotent
LongRoiResultMap getMeasuredRoisMap(long imageId, LongList annotationIds, RoiOptions opts) throws omero::ServerError;

/**
* Returns the OMERO.tables service via the [omero::model::FileAnnotation] id returned
* by getImageMeasurements.
**/
["deprecated:IROI is deprecated."]
idempotent
omero::grid::Table* getTable(long annotationId) throws omero::ServerError;

["deprecated:IROI is deprecated."]
void uploadMask(long roiId, int z, int t, Ice::ByteSeq bytes) throws omero::ServerError;

};
Expand Down