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Lorenzo additions

Lorenzo additions #328

Workflow file for this run

# The purpose of this action is to run `document()` of the roxygen2 package on each commit.
# If new documentation was generated, it will automatically add a commit to the current branch.
# This has the same effect as running `document()` locally, but
# * ensures it cannot be forgotten
# * saves setting up the development environment locally, which is especially useful for new contributors.
#
# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
on:
pull_request:
paths: ["R/**", ".github/workflows"]
name: Document
jobs:
document:
runs-on: ubuntu-latest
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
steps:
- name: Checkout repo
uses: actions/checkout@v4
with:
fetch-depth: 0
# extra token required to trigger github actions again on commit
token: ${{ secrets.BOT_GH_TOKEN }}
- name: Update system dependencies
# due to recent versions of GLIBC missing
run: |
sudo apt-get update && sudo apt-get install cmake libstdc++6 \
libcurl4-openssl-dev libssl-dev libxml2-dev libfontconfig1-dev \
libharfbuzz-dev libfribidi-dev \
libfreetype6-dev libpng-dev libtiff5-dev libjpeg-dev -y \
pandoc pandoc-citeproc
- uses: r-lib/actions/setup-pandoc@v2
- uses: r-lib/actions/setup-r@v2
with:
use-public-rspm: true
- name: Install pak
run: Rscript -e "install.packages('pak', repos='https://cran.rstudio.com/')"
- name: Install reticulate
run: Rscript -e "install.packages('reticulate', repos='https://cran.rstudio.com/', version = '1.35.0')"
- name: Install dependencies
uses: r-lib/actions/setup-r-dependencies@v2
with:
extra-packages: any::roxygen2
needs: roxygen2
- name: Document
run: roxygen2::roxygenise()
shell: Rscript {0}
- uses: stefanzweifel/git-auto-commit-action@v4
with:
commit_message: Roxygenize