Next minor release #177
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Next minor release #177
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zhx828
commented
Jun 6, 2022
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zhx828
commented
- Support structural variant annotator (Support structural variant annotator #161)
- Support individual CNA file format(Support individual CNA file format #162)
- Validate oncokb token before starting the annotation (Validate oncokb token before starting the annotation #163)
- Update logics on calculating highest TX level (Update logics on calculating highest tx level #164)
- Add resistance mutations columns and split TX count column by sensitive and resistance (Add resistance mutations columns and split TX count column by sensitive and resistance #173)
- Provide more info when required parameter of each annotator is missing(Provide more info when required parameter of each annotator is missing #174)
Consolidate oncokb annotation column headers
* Validate oncokb token before starting the annotation * Enable workflows on next-minor-release branch
Merge the latest master
This would be useful when API returns code other than 200
The following format will be supported | Tumor_Sample_Barcode | Hugo_Symbol | Copy_Number_Alteration | |----------------------|-------------|------------------------| | TCGA-05-4417-01 | MET | 2 | | TCGA-05-4417-01 | ERBB2 | 2 |
Support individual CNA file format
Add ANNOTATED column based on API status
…ve and resistance
Add resistance mutations columns and split TX count column by sensitive and resistance
Provide more info when required parameter of each annotator is missing
Minor update
Minor updates on the example script
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