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Append dim even both dim value and param are not set #3828

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merged 5 commits into from Jan 13, 2022

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xuzijian629
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@xuzijian629 xuzijian629 commented Nov 8, 2021

Description

  • In data propagation, fix appendDimToTensorShapeProto so that a dimension is appended even when both dim value and param are not known.

Motivation and Context

  • I got a ShapeInferenceError caused by here, where the input_data is not nullptr but its dims have neither dim_values nor dim_params.

Signed-off-by: Joe <joe@preferred.jp>
@xuzijian629 xuzijian629 requested a review from a team as a code owner November 8, 2021 04:59
Signed-off-by: Joe <joe@preferred.jp>
@askhade
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askhade commented Nov 8, 2021

Curious - Are you using ONNX's graph level shape inference? meaning are you using onnx shape inference apis? When using onnx graph level shape inference I don't know how you could land in this situation this because - either the input data is an initializer in which case all dimensions are dim values or the input data is dynamic in which case graph level shape inference will create a symbol for every unknown dim... (https://github.com/onnx/onnx/blob/master/onnx/shape_inference/implementation.cc#L141)

However, not all runtimes implement symbol generation and therefore it may be best to include your fix.

@jcwchen jcwchen added the shape inference Issues related to shape inference label Nov 8, 2021
} else if (dim.has_dim_param()) {
tsp.mutable_dim()->Add()->set_dim_param(dim.dim_param());
}
tsp.mutable_dim()->Add()->CopyFrom(dim);
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can you simply add a dim? tsp.mutable_dim()->Add() instead of Copy

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askhade commented Nov 10, 2021

@xuzijian629 : The PR looks good to me. I added a minor comment. As soon as you address it we can merge this. Thanks for your contribution.

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askhade commented Nov 17, 2021

@xuzijian629: Any updates?

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askhade commented Jan 5, 2022

Any updates?

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Sorry, I missed the notification. I will soon make an update 🙇

This reverts commit 6623505.

Signed-off-by: Joe <joe@preferred.jp>
@xuzijian629
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#3828 (comment)

Yes, I encountered this problem when I was using ONNX's graph level shape inference.

I got the bug in the following part of a model.

Since I cropped the graph, the inputs of Gather and Sub are hidden. Note that the inputs to Unsqueezes are all 0-dimensional (i.e., scalar).

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I summarized the above explanation into code.

Note that before running this, you may need to merge #3784 because the following code uses data propagation for ConstantOfShape.

import onnx
from onnx import parser, helper, shape_inference

input = '''
   agraph (float[3, n] x) => ()
   {
        shape = Shape(x)
        one = Constant<value = int64 {1}>()
        scalar = Gather(shape, one)
        subbed = Sub(scalar, one)
        unsqueeze_dim = Constant<value = int64[1] {0}>()
        unsqueezed = Unsqueeze(subbed, unsqueeze_dim)
        concat_out = Concat<axis = 0>(shape, unsqueezed)
        out = ConstantOfShape(concat_out)
   }
'''
graph = parser.parse_graph(input)
original_model = helper.make_model(graph, producer_name='onnx-examples')
onnx.checker.check_model(original_model)

# Apply shape inference on the model
inferred_model = shape_inference.infer_shapes(original_model, data_prop=True)
onnx.checker.check_model(inferred_model)
print(inferred_model.graph.value_info)

With this PR, the output shape of out is [3, n, unk__0], where as the existing ONNX infers as [3, n], which has incorrect rank.

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Please take a look! @askhade 🙇

@@ -11,6 +11,8 @@ inline void appendDimToTensorShapeProto(TensorShapeProto& tsp, const TensorShape
tsp.mutable_dim()->Add()->set_dim_value(dim.dim_value());
} else if (dim.has_dim_param()) {
tsp.mutable_dim()->Add()->set_dim_param(dim.dim_param());
} else {
tsp.mutable_dim()->Add();
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Thanks for fixing this! This looks correct. But I think the whole function can be simplified to

   * tsp.add_dim() = dim;

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Thank you!

Signed-off-by: Joe <joe@preferred.jp>
@askhade askhade enabled auto-merge (squash) January 13, 2022 00:13
@askhade askhade merged commit a161a0d into onnx:main Jan 13, 2022
@xuzijian629 xuzijian629 deleted the dataprop_appenddim branch January 13, 2022 00:55
liqunfu pushed a commit to liqunfu/onnx that referenced this pull request Jan 19, 2022
* Append dim even both dim value and param are not set

Signed-off-by: Joe <joe@preferred.jp>

* Copy dim

Signed-off-by: Joe <joe@preferred.jp>

* Revert "Copy dim"

This reverts commit 6623505.

Signed-off-by: Joe <joe@preferred.jp>

* Simplify code

Signed-off-by: Joe <joe@preferred.jp>

Co-authored-by: Ashwini Khade <askhade@microsoft.com>
Signed-off-by: Liqun Fu <liqfu@microsoft.com>
askhade added a commit that referenced this pull request Jan 19, 2022
#3902)

* Fix typos (#3894)

Signed-off-by: Lewis Tunstall <lewis.c.tunstall@gmail.com>
Signed-off-by: Liqun Fu <liqfu@microsoft.com>

* Honor existing dim_param in shape inference (#3896)

* Honor existing dim_param

Before this change, existing dim_param was overwritten by generated
symbols like `unk__`. `NonZero` is used to test the behavior.

Signed-off-by: Shinichiro Hamaji <shinichiro.hamaji@gmail.com>

* Fix test expectation of symbolic_shape_test.py

Signed-off-by: Shinichiro Hamaji <shinichiro.hamaji@gmail.com>

* Keep the original check as suggested in review

Signed-off-by: Shinichiro Hamaji <shinichiro.hamaji@gmail.com>

* Simplify the logic of mergeShapesAndTypes

Signed-off-by: Shinichiro Hamaji <shinichiro.hamaji@gmail.com>

Co-authored-by: Ashwini Khade <askhade@microsoft.com>
Signed-off-by: Liqun Fu <liqfu@microsoft.com>

* for issue 3849 to confirm that type check is performed during checker.check_model call

Signed-off-by: Liqun Fu <liqfu@microsoft.com>

* fix path to InferenceError

Signed-off-by: Liqun Fu <liqfu@microsoft.com>

* replace whitelist by safelist (#3900)

Signed-off-by: Alexandre Eichenberger <alexe@us.ibm.com>
Signed-off-by: Liqun Fu <liqfu@microsoft.com>

* add checker test case for input type mismatch conflict

Signed-off-by: Liqun Fu <liqfu@microsoft.com>

* remove old numpy in ipynb (#3916)

Signed-off-by: Chun-Wei Chen <jacky82226@gmail.com>
Signed-off-by: Liqun Fu <liqfu@microsoft.com>

* Shapeinf for functions (#3722)

* add shape inference for model local functions

Signed-off-by: Ashwini Khade <askhade@microsoft.com>

* Plus tests and more changes

Signed-off-by: Ashwini Khade <askhade@microsoft.com>

* fix typo

Signed-off-by: Ashwini Khade <askhade@microsoft.com>

* Plus updates

Signed-off-by: Ashwini Khade <askhade@microsoft.com>

* Plus updates per review

Signed-off-by: Ashwini Khade <askhade@microsoft.com>

* plus updates

Signed-off-by: Ashwini Khade <askhade@microsoft.com>
Signed-off-by: Liqun Fu <liqfu@microsoft.com>

* Fix old ConvTranspose shape inference and softmax upgrader (#3893)

* Fixed ConvTranspose-1 shape inference

Brings change from #3188 (for ConvTranspose-11) into old shape inference
Signed-off-by: Matteo Salvarezza <matteo.salvarezza@gmail.com>

* Fix softmax adapter

Signed-off-by: Matteo Salvarezza <matteo.salvarezza@gmail.com>

Co-authored-by: G. Ramalingam <grama@microsoft.com>
Signed-off-by: Liqun Fu <liqfu@microsoft.com>

* Fix Linux i686 Release CI failure due to the latest NumPy (#3918)

* 3.8 and 3.9 use numpy 1.21.5

Signed-off-by: Chun-Wei Chen <jacky82226@gmail.com>

* 1.21.4

Signed-off-by: Chun-Wei Chen <jacky82226@gmail.com>

* 6be8011a073feeca08d256ac64335a19fc8eee4c6312668b6781ace71db0de20

Signed-off-by: Chun-Wei Chen <jacky82226@gmail.com>

* 2021-12-19-a4d7f5a

Signed-off-by: Chun-Wei Chen <jacky82226@gmail.com>

* 1.21.5

Signed-off-by: Chun-Wei Chen <jacky82226@gmail.com>

* 1.16.6

Signed-off-by: Chun-Wei Chen <jacky82226@gmail.com>

* 1.16.6

Signed-off-by: Chun-Wei Chen <jacky82226@gmail.com>

* do not check generated

Signed-off-by: Chun-Wei Chen <jacky82226@gmail.com>

* remove unrelated numpy

Signed-off-by: Chun-Wei Chen <jacky82226@gmail.com>

* if

Signed-off-by: Chun-Wei Chen <jacky82226@gmail.com>

* remove generation

Signed-off-by: Chun-Wei Chen <jacky82226@gmail.com>

* name

Signed-off-by: Chun-Wei Chen <jacky82226@gmail.com>

* add back

Signed-off-by: Chun-Wei Chen <jacky82226@gmail.com>

* for testing

Signed-off-by: Chun-Wei Chen <jacky82226@gmail.com>

* no 1.16.6

Signed-off-by: Chun-Wei Chen <jacky82226@gmail.com>
Signed-off-by: Liqun Fu <liqfu@microsoft.com>

* Remind release manager to remove old onnx-weekly packages after release (#3923)

* remind release manager to remove old onnx-weekly packages

Signed-off-by: Chun-Wei Chen <jacky82226@gmail.com>

* add steps

Signed-off-by: Chun-Wei Chen <jacky82226@gmail.com>
Signed-off-by: Liqun Fu <liqfu@microsoft.com>

* Simplify function definition of context-dependent functions (#3882)

* Simplify function definition of context-dependent functions

Signed-off-by: Ganesan Ramalingam <grama@microsoft.com>

* Add missing parenthesis

Signed-off-by: Ganesan Ramalingam <grama@microsoft.com>

* Fix errors in function defs

Signed-off-by: Ganesan Ramalingam <grama@microsoft.com>

* Eliminate unused variable

Signed-off-by: Ganesan Ramalingam <grama@microsoft.com>

* Add int64 type specifier to literal

Signed-off-by: Ganesan Ramalingam <grama@microsoft.com>

Co-authored-by: Ashwini Khade <askhade@microsoft.com>
Signed-off-by: Liqun Fu <liqfu@microsoft.com>

* Migration to using main branch (#3925)

* add warning announce

Signed-off-by: Chun-Wei Chen <jacky82226@gmail.com>

* Rename to main branch globally

Signed-off-by: Chun-Wei Chen <jacky82226@gmail.com>
Signed-off-by: Liqun Fu <liqfu@microsoft.com>

* Fix the bug of shape in docs (#3927)

* fix the bug of shape

Signed-off-by: namasikanam <namasikanam@gmail.com>

* fix the bug of shape

Signed-off-by: namasikanam <namasikanam@gmail.com>

Co-authored-by: Ashwini Khade <askhade@microsoft.com>
Signed-off-by: Liqun Fu <liqfu@microsoft.com>

* Append dim even both dim value and param are not set (#3828)

* Append dim even both dim value and param are not set

Signed-off-by: Joe <joe@preferred.jp>

* Copy dim

Signed-off-by: Joe <joe@preferred.jp>

* Revert "Copy dim"

This reverts commit 6623505.

Signed-off-by: Joe <joe@preferred.jp>

* Simplify code

Signed-off-by: Joe <joe@preferred.jp>

Co-authored-by: Ashwini Khade <askhade@microsoft.com>
Signed-off-by: Liqun Fu <liqfu@microsoft.com>

* bump to 10.15 in azp (#3941)

Signed-off-by: Chun-Wei Chen <jacky82226@gmail.com>
Signed-off-by: Liqun Fu <liqfu@microsoft.com>

* Add explanation to run gtest (#3933)

Signed-off-by: Joe <joe@preferred.jp>

Co-authored-by: Ashwini Khade <askhade@microsoft.com>
Signed-off-by: Liqun Fu <liqfu@microsoft.com>

* Update TreeEnsembleClassifier and TreeEnsembleRegressor to support tensor as attributes (#3897)

* update TreeEnsembleClassifier and TreeEnsembleRegressor

Signed-off-by: xavier dupré <xavier.dupre@gmail.com>

* change the type of another attribute

Signed-off-by: xavier dupré <xavier.dupre@gmail.com>

* add missing file

Signed-off-by: xavier dupré <xavier.dupre@gmail.com>

* update documentation

Signed-off-by: xavier dupré <xavier.dupre@gmail.com>

* eol

Signed-off-by: xavier dupré <xavier.dupre@gmail.com>

* add field with _as_tensor

Signed-off-by: xavier dupré <xavier.dupre@gmail.com>

* fix error messages

Signed-off-by: xavier dupré <xavier.dupre@gmail.com>

* fix error message

Signed-off-by: xavier dupré <xavier.dupre@gmail.com>

* fix missing change

Signed-off-by: xavier dupré <xavier.dupre@gmail.com>

Co-authored-by: xavier dupré <xavier.dupre@gmail.com>
Co-authored-by: G. Ramalingam <grama@microsoft.com>
Signed-off-by: Liqun Fu <liqfu@microsoft.com>

Co-authored-by: lewtun <lewis.c.tunstall@gmail.com>
Co-authored-by: Shinichiro Hamaji <shinichiro.hamaji@gmail.com>
Co-authored-by: Ashwini Khade <askhade@microsoft.com>
Co-authored-by: Alexandre Eichenberger <alexe@us.ibm.com>
Co-authored-by: Chun-Wei Chen <jacky82226@gmail.com>
Co-authored-by: Matteo Salvarezza <matteo.salvarezza@gmail.com>
Co-authored-by: G. Ramalingam <grama@microsoft.com>
Co-authored-by: Xingyu Xie <namasikanam@gmail.com>
Co-authored-by: Joe <joe@preferred.jp>
Co-authored-by: Xavier Dupré <xadupre@users.noreply.github.com>
Co-authored-by: xavier dupré <xavier.dupre@gmail.com>
liqunfu added a commit to liqunfu/onnx that referenced this pull request Jan 24, 2022
onnx#3902)

* Fix typos (onnx#3894)

Signed-off-by: Lewis Tunstall <lewis.c.tunstall@gmail.com>
Signed-off-by: Liqun Fu <liqfu@microsoft.com>

* Honor existing dim_param in shape inference (onnx#3896)

* Honor existing dim_param

Before this change, existing dim_param was overwritten by generated
symbols like `unk__`. `NonZero` is used to test the behavior.

Signed-off-by: Shinichiro Hamaji <shinichiro.hamaji@gmail.com>

* Fix test expectation of symbolic_shape_test.py

Signed-off-by: Shinichiro Hamaji <shinichiro.hamaji@gmail.com>

* Keep the original check as suggested in review

Signed-off-by: Shinichiro Hamaji <shinichiro.hamaji@gmail.com>

* Simplify the logic of mergeShapesAndTypes

Signed-off-by: Shinichiro Hamaji <shinichiro.hamaji@gmail.com>

Co-authored-by: Ashwini Khade <askhade@microsoft.com>
Signed-off-by: Liqun Fu <liqfu@microsoft.com>

* for issue 3849 to confirm that type check is performed during checker.check_model call

Signed-off-by: Liqun Fu <liqfu@microsoft.com>

* fix path to InferenceError

Signed-off-by: Liqun Fu <liqfu@microsoft.com>

* replace whitelist by safelist (onnx#3900)

Signed-off-by: Alexandre Eichenberger <alexe@us.ibm.com>
Signed-off-by: Liqun Fu <liqfu@microsoft.com>

* add checker test case for input type mismatch conflict

Signed-off-by: Liqun Fu <liqfu@microsoft.com>

* remove old numpy in ipynb (onnx#3916)

Signed-off-by: Chun-Wei Chen <jacky82226@gmail.com>
Signed-off-by: Liqun Fu <liqfu@microsoft.com>

* Shapeinf for functions (onnx#3722)

* add shape inference for model local functions

Signed-off-by: Ashwini Khade <askhade@microsoft.com>

* Plus tests and more changes

Signed-off-by: Ashwini Khade <askhade@microsoft.com>

* fix typo

Signed-off-by: Ashwini Khade <askhade@microsoft.com>

* Plus updates

Signed-off-by: Ashwini Khade <askhade@microsoft.com>

* Plus updates per review

Signed-off-by: Ashwini Khade <askhade@microsoft.com>

* plus updates

Signed-off-by: Ashwini Khade <askhade@microsoft.com>
Signed-off-by: Liqun Fu <liqfu@microsoft.com>

* Fix old ConvTranspose shape inference and softmax upgrader (onnx#3893)

* Fixed ConvTranspose-1 shape inference

Brings change from onnx#3188 (for ConvTranspose-11) into old shape inference
Signed-off-by: Matteo Salvarezza <matteo.salvarezza@gmail.com>

* Fix softmax adapter

Signed-off-by: Matteo Salvarezza <matteo.salvarezza@gmail.com>

Co-authored-by: G. Ramalingam <grama@microsoft.com>
Signed-off-by: Liqun Fu <liqfu@microsoft.com>

* Fix Linux i686 Release CI failure due to the latest NumPy (onnx#3918)

* 3.8 and 3.9 use numpy 1.21.5

Signed-off-by: Chun-Wei Chen <jacky82226@gmail.com>

* 1.21.4

Signed-off-by: Chun-Wei Chen <jacky82226@gmail.com>

* 6be8011a073feeca08d256ac64335a19fc8eee4c6312668b6781ace71db0de20

Signed-off-by: Chun-Wei Chen <jacky82226@gmail.com>

* 2021-12-19-a4d7f5a

Signed-off-by: Chun-Wei Chen <jacky82226@gmail.com>

* 1.21.5

Signed-off-by: Chun-Wei Chen <jacky82226@gmail.com>

* 1.16.6

Signed-off-by: Chun-Wei Chen <jacky82226@gmail.com>

* 1.16.6

Signed-off-by: Chun-Wei Chen <jacky82226@gmail.com>

* do not check generated

Signed-off-by: Chun-Wei Chen <jacky82226@gmail.com>

* remove unrelated numpy

Signed-off-by: Chun-Wei Chen <jacky82226@gmail.com>

* if

Signed-off-by: Chun-Wei Chen <jacky82226@gmail.com>

* remove generation

Signed-off-by: Chun-Wei Chen <jacky82226@gmail.com>

* name

Signed-off-by: Chun-Wei Chen <jacky82226@gmail.com>

* add back

Signed-off-by: Chun-Wei Chen <jacky82226@gmail.com>

* for testing

Signed-off-by: Chun-Wei Chen <jacky82226@gmail.com>

* no 1.16.6

Signed-off-by: Chun-Wei Chen <jacky82226@gmail.com>
Signed-off-by: Liqun Fu <liqfu@microsoft.com>

* Remind release manager to remove old onnx-weekly packages after release (onnx#3923)

* remind release manager to remove old onnx-weekly packages

Signed-off-by: Chun-Wei Chen <jacky82226@gmail.com>

* add steps

Signed-off-by: Chun-Wei Chen <jacky82226@gmail.com>
Signed-off-by: Liqun Fu <liqfu@microsoft.com>

* Simplify function definition of context-dependent functions (onnx#3882)

* Simplify function definition of context-dependent functions

Signed-off-by: Ganesan Ramalingam <grama@microsoft.com>

* Add missing parenthesis

Signed-off-by: Ganesan Ramalingam <grama@microsoft.com>

* Fix errors in function defs

Signed-off-by: Ganesan Ramalingam <grama@microsoft.com>

* Eliminate unused variable

Signed-off-by: Ganesan Ramalingam <grama@microsoft.com>

* Add int64 type specifier to literal

Signed-off-by: Ganesan Ramalingam <grama@microsoft.com>

Co-authored-by: Ashwini Khade <askhade@microsoft.com>
Signed-off-by: Liqun Fu <liqfu@microsoft.com>

* Migration to using main branch (onnx#3925)

* add warning announce

Signed-off-by: Chun-Wei Chen <jacky82226@gmail.com>

* Rename to main branch globally

Signed-off-by: Chun-Wei Chen <jacky82226@gmail.com>
Signed-off-by: Liqun Fu <liqfu@microsoft.com>

* Fix the bug of shape in docs (onnx#3927)

* fix the bug of shape

Signed-off-by: namasikanam <namasikanam@gmail.com>

* fix the bug of shape

Signed-off-by: namasikanam <namasikanam@gmail.com>

Co-authored-by: Ashwini Khade <askhade@microsoft.com>
Signed-off-by: Liqun Fu <liqfu@microsoft.com>

* Append dim even both dim value and param are not set (onnx#3828)

* Append dim even both dim value and param are not set

Signed-off-by: Joe <joe@preferred.jp>

* Copy dim

Signed-off-by: Joe <joe@preferred.jp>

* Revert "Copy dim"

This reverts commit 6623505.

Signed-off-by: Joe <joe@preferred.jp>

* Simplify code

Signed-off-by: Joe <joe@preferred.jp>

Co-authored-by: Ashwini Khade <askhade@microsoft.com>
Signed-off-by: Liqun Fu <liqfu@microsoft.com>

* bump to 10.15 in azp (onnx#3941)

Signed-off-by: Chun-Wei Chen <jacky82226@gmail.com>
Signed-off-by: Liqun Fu <liqfu@microsoft.com>

* Add explanation to run gtest (onnx#3933)

Signed-off-by: Joe <joe@preferred.jp>

Co-authored-by: Ashwini Khade <askhade@microsoft.com>
Signed-off-by: Liqun Fu <liqfu@microsoft.com>

* Update TreeEnsembleClassifier and TreeEnsembleRegressor to support tensor as attributes (onnx#3897)

* update TreeEnsembleClassifier and TreeEnsembleRegressor

Signed-off-by: xavier dupré <xavier.dupre@gmail.com>

* change the type of another attribute

Signed-off-by: xavier dupré <xavier.dupre@gmail.com>

* add missing file

Signed-off-by: xavier dupré <xavier.dupre@gmail.com>

* update documentation

Signed-off-by: xavier dupré <xavier.dupre@gmail.com>

* eol

Signed-off-by: xavier dupré <xavier.dupre@gmail.com>

* add field with _as_tensor

Signed-off-by: xavier dupré <xavier.dupre@gmail.com>

* fix error messages

Signed-off-by: xavier dupré <xavier.dupre@gmail.com>

* fix error message

Signed-off-by: xavier dupré <xavier.dupre@gmail.com>

* fix missing change

Signed-off-by: xavier dupré <xavier.dupre@gmail.com>

Co-authored-by: xavier dupré <xavier.dupre@gmail.com>
Co-authored-by: G. Ramalingam <grama@microsoft.com>
Signed-off-by: Liqun Fu <liqfu@microsoft.com>

Co-authored-by: lewtun <lewis.c.tunstall@gmail.com>
Co-authored-by: Shinichiro Hamaji <shinichiro.hamaji@gmail.com>
Co-authored-by: Ashwini Khade <askhade@microsoft.com>
Co-authored-by: Alexandre Eichenberger <alexe@us.ibm.com>
Co-authored-by: Chun-Wei Chen <jacky82226@gmail.com>
Co-authored-by: Matteo Salvarezza <matteo.salvarezza@gmail.com>
Co-authored-by: G. Ramalingam <grama@microsoft.com>
Co-authored-by: Xingyu Xie <namasikanam@gmail.com>
Co-authored-by: Joe <joe@preferred.jp>
Co-authored-by: Xavier Dupré <xadupre@users.noreply.github.com>
Co-authored-by: xavier dupré <xavier.dupre@gmail.com>
Signed-off-by: Liqun Fu <liqfu@microsoft.com>
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