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Operation to auto-add curation status #2

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cmungall opened this issue Mar 3, 2015 · 4 comments
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Operation to auto-add curation status #2

cmungall opened this issue Mar 3, 2015 · 4 comments
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@cmungall
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cmungall commented Mar 3, 2015

At NCEAS meeting. Seems would be very useful to have better population of IAO curation status field. This could be partly automated (e.g. no def means not approved). If the TBN tool could generate these (by a configuration that is configurable on a per-ontology basis) that would be useful. May be as simple as a SPARQL UPDATE

@cmungall
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cmungall commented Mar 5, 2015

@jamesaoverton
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The OBI build tool has an ugly class that checks our minimal metadata rules and updates terms:

https://sourceforge.net/p/obi/code/HEAD/tree/trunk/src/tools/build/src/main/java/obi/TermUpdater.java

SPARQL Update would be much better for expressing the rules. I think we'd have to switch from OWLAPI to Jena then back to OWLAPI. Is there an efficient way to do this?

@cmungall
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I'm not aware of a bridge layer.

@jamesaoverton jamesaoverton modified the milestone: ROBOT for OBI May 11, 2015
@jamesaoverton
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I'm using this SPARQL for OBI and it's working fine: https://github.com/obi-ontology/obi/blob/master/src/sparql/add-curation-status-construct.rq

jamesaoverton pushed a commit that referenced this issue Oct 16, 2018
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dougli1sqrd pushed a commit to dougli1sqrd/robot that referenced this issue Nov 8, 2018
jamesaoverton pushed a commit that referenced this issue Mar 29, 2024
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