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INFO:cooler:Creating cooler at "out.cool::/"
INFO:cooler:Writing chroms
INFO:cooler:Writing bins
INFO:cooler:Writing pixels
Traceback (most recent call last):
File "/usr/local/bin/cooler", line 11, in <module>
sys.exit(cli())
File "/usr/local/lib/python3.5/dist-packages/click/core.py", line 722, in __call__
return self.main(*args, **kwargs)
File "/usr/local/lib/python3.5/dist-packages/click/core.py", line 697, in main
rv = self.invoke(ctx)
File "/usr/local/lib/python3.5/dist-packages/click/core.py", line 1066, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
File "/usr/local/lib/python3.5/dist-packages/click/core.py", line 1066, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
File "/usr/local/lib/python3.5/dist-packages/click/core.py", line 895, in invoke
return ctx.invoke(self.callback, **ctx.params)
File "/usr/local/lib/python3.5/dist-packages/click/core.py", line 535, in invoke
return callback(*args, **kwargs)
File "/usr/local/lib/python3.5/dist-packages/cooler/cli/cload.py", line 243, in pairix
create(cool_path, bins, iterator, metadata, assembly)
File "/usr/local/lib/python3.5/dist-packages/cooler/io.py", line 237, in create
file_path, target, meta.columns, iterable, h5opts, lock)
File "/usr/local/lib/python3.5/dist-packages/cooler/_writer.py", line 184, in write_pixels
for i, chunk in enumerate(iterable):
File "/usr/local/lib/python3.5/dist-packages/cooler/_binning.py", line 455, in __iter__
granges = balanced_partition(self.gs, self.n_chunks, self.file_contigs)
File "/usr/local/lib/python3.5/dist-packages/cooler/_binning.py", line 74, in balanced_partition
grouped = gs.bins.groupby('chrom', sort=False)
File "/usr/local/lib/python3.5/dist-packages/pandas/core/generic.py", line 4271, in groupby
**kwargs)
File "/usr/local/lib/python3.5/dist-packages/pandas/core/groupby.py", line 1626, in groupby
return klass(obj, by, **kwds)
File "/usr/local/lib/python3.5/dist-packages/pandas/core/groupby.py", line 392, in __init__
mutated=self.mutated)
File "/usr/local/lib/python3.5/dist-packages/pandas/core/groupby.py", line 2625, in _get_grouper
if is_categorical_dtype(gpr) and len(gpr) != len(obj):
File "/usr/local/lib/python3.5/dist-packages/pandas/core/series.py", line 465, in __len__
return len(self._data)
File "/usr/local/lib/python3.5/dist-packages/pandas/core/internals.py", line 2987, in __len__
return len(self.items)
File "/usr/local/lib/python3.5/dist-packages/pandas/core/internals.py", line 2898, in _get_items
return self.axes[0]
IndexError: list index out of range
The text was updated successfully, but these errors were encountered:
The text was updated successfully, but these errors were encountered: