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fetch-chromsizes #393

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gfudenberg opened this issue Oct 10, 2022 · 1 comment
Open

fetch-chromsizes #393

gfudenberg opened this issue Oct 10, 2022 · 1 comment
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@gfudenberg
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don't save header for
cooltools genome fetch-chromsizes, since headerless files are expected for downstream cooltools cli functions.
@gfudenberg
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This came up in developing a CLI tutorial where

!cooltools genome fetch-chromsizes hg38 | tail -n+2 > ./outputs/chromsizes.tsv

was needed to run

!cooltools genome binnify ./outputs/chromsizes.tsv 100000 | grep "chrom\|chr2\t\|chr17" > outputs/bins.100000.tsv

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@gfudenberg