Merge pull request #2234 from opencb/TASK-3813

TASK-3813 Fix gene coverage stats analysis when using CellBase data release
opencb · Jan 20, 2023 · d71f95b · d71f95b
2 parents 67a5628 + cc7d22a
commit d71f95b
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diff --git a/...analysis/src/main/java/org/opencb/opencga/analysis/alignment/AlignmentStorageManager.java b/...analysis/src/main/java/org/opencb/opencga/analysis/alignment/AlignmentStorageManager.java
@@ -222,7 +222,8 @@ public OpenCGAResult<GeneCoverageStats> coverageStats(String studyIdStr, String
         // Get species and assembly from catalog
         OpenCGAResult<Project> projectQueryResult = catalogManager.getProjectManager().search(
                 new Query(ProjectDBAdaptor.QueryParams.STUDY.key(), studyIdStr),
-                new QueryOptions(QueryOptions.INCLUDE, ProjectDBAdaptor.QueryParams.ORGANISM.key()), token);
+                new QueryOptions(QueryOptions.INCLUDE, Arrays.asList(ProjectDBAdaptor.QueryParams.ORGANISM.key(),
+                        ProjectDBAdaptor.QueryParams.CELLBASE.key())), token);
         if (projectQueryResult.getNumResults() != 1) {
             throw new CatalogException("Error getting species and assembly from catalog");
         }