v3.1.0

What's Changed

• TASK-5670 - Exception deploying opencga on Apache Tomcat by @j-coll in #2399
• TASK-5493 - Error in variant-index-annotation : "Private sources has changed" by @j-coll in #2395
• TASK-5556 - OpenCGA CLI --json-data-model does not produce parseable JSONS by @juanfeSanahuja in #2394
• TASK-5624 - jq parse error - extra slf4j library by @j-coll in #2402
• TASK-5645 Fix alignment and coverage index operations by @jtarraga in #2398
• TASK-5439 Update Junit test Cellbase and save infra resources by @jtarraga in #2400
• TASK-5741 - Jobs tag not being propagated at variant-index-launcher by @j-coll in #2407
• TASK-5827 - Port Patch 1.10.3 -> 2.1.0 by @juanfeSanahuja in #2414
• TASK-5807 - Automatic docker tag doesn't include hadoop flavour by @j-coll in #2415
• TASK-5754 - Deployment: Update solr to 8.11.3 by @juanfeSanahuja in #2411
• TASK-5696 - Migrate GitHub Actions to v4 by @juanfeSanahuja in #2419
• TASK-5869 - OpenCGA throws a NullPointerException when trying to refresh session by @pfurio in #2420
• TASK-5659 - Fix Organizations small issues found during testing by @pfurio in #2403
• TASK-5804 - Organization updates can be performed by any user by @pfurio in #2424
• TASK-5716 - Renaming a file is not reflected on the list of files contained by samples by @pfurio in #2413
• TASK-5836 - Properly implement new Notes functionality by @pfurio in #2421
• TASK-6019 - Note migration may raise errors by @pfurio in #2429
• TASK-5922 - Organization info doesn't return array of projects by @pfurio in #2422
• TASK-5923 - Organization returns authentication origins secretKey by @pfurio in #2428
• TASK-6032 - User info does not return projects by @pfurio in #2430
• TASK-6185 - Modify release workflows for OpenCB and Enterprise to include all 4 Hadoop flavors by @juanfeSanahuja in #2447
• TASK-6209 - Error executing MapReduce operations in emr6.13 by @j-coll in #2446
• TASK-6245 - Main OpenCGA v3 migration is broken by @pfurio in #2451

Full Changelog: v3.0.0...v3.1.0