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Merge pull request #2456 from opencb/TASK-6305 #954

Merge pull request #2456 from opencb/TASK-6305

Merge pull request #2456 from opencb/TASK-6305 #954

GitHub Actions / Surefire tests report failed May 24, 2024 in 0s

1452 tests run, 49 skipped, 1 failed.

Annotations

Check failure on line 216 in opencga-storage/opencga-storage-core/src/test/java/org/opencb/opencga/storage/core/variant/search/VariantSearchTest.java

See this annotation in the file changed.

@github-actions github-actions / Surefire tests report

VariantSearchTest.testSpecialCharacter

Unknown file "a.vcf". Please, specify the study belonging. Available studies: [abyu12]
Raw output
org.opencb.opencga.storage.core.variant.adaptors.VariantQueryException: Unknown file "a.vcf". Please, specify the study belonging. Available studies: [abyu12]
	at org.opencb.opencga.storage.core.variant.adaptors.VariantQueryException.missingStudyFor0(VariantQueryException.java:194)
	at org.opencb.opencga.storage.core.variant.adaptors.VariantQueryException.missingStudyFor(VariantQueryException.java:189)
	at org.opencb.opencga.storage.core.metadata.VariantStorageMetadataManager.getResourcePair(VariantStorageMetadataManager.java:1425)
	at org.opencb.opencga.storage.core.metadata.VariantStorageMetadataManager.getResourcePair(VariantStorageMetadataManager.java:1399)
	at org.opencb.opencga.storage.core.metadata.VariantStorageMetadataManager.getFileIdPair(VariantStorageMetadataManager.java:763)
	at org.opencb.opencga.storage.core.variant.query.VariantQueryParser.preProcessStudyParams(VariantQueryParser.java:466)
	at org.opencb.opencga.storage.core.variant.query.VariantQueryParser.preProcessQuery(VariantQueryParser.java:245)
	at org.opencb.opencga.storage.core.variant.query.VariantQueryParser.parseQuery(VariantQueryParser.java:177)
	at org.opencb.opencga.storage.core.variant.query.VariantQueryParser.parseQuery(VariantQueryParser.java:153)
	at org.opencb.opencga.storage.core.variant.VariantStorageEngine.parseQuery(VariantStorageEngine.java:1375)
	at org.opencb.opencga.storage.core.variant.search.VariantSearchTest.testSpecialCharacter(VariantSearchTest.java:216)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:498)
	at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:59)
	at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
	at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:56)
	at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17)
	at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:26)
	at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:27)
	at org.junit.rules.TestWatcher$1.evaluate(TestWatcher.java:61)
	at org.junit.rules.ExternalResource$1.evaluate(ExternalResource.java:54)
	at org.junit.rules.ExpectedException$ExpectedExceptionStatement.evaluate(ExpectedException.java:258)
	at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
	at org.junit.runners.BlockJUnit4ClassRunner$1.evaluate(BlockJUnit4ClassRunner.java:100)
	at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:366)
	at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:103)
	at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:63)
	at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
	at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:79)
	at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329)
	at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66)
	at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293)
	at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:26)
	at org.junit.rules.TestWatcher$1.evaluate(TestWatcher.java:61)
	at org.junit.rules.RunRules.evaluate(RunRules.java:20)
	at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
	at org.junit.runners.ParentRunner.run(ParentRunner.java:413)
	at org.junit.runners.Suite.runChild(Suite.java:128)
	at org.junit.runners.Suite.runChild(Suite.java:27)
	at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
	at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:79)
	at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329)
	at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66)
	at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293)
	at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
	at org.junit.runners.ParentRunner.run(ParentRunner.java:413)
	at org.apache.maven.surefire.junitcore.JUnitCore.run(JUnitCore.java:49)
	at org.apache.maven.surefire.junitcore.JUnitCoreWrapper.createRequestAndRun(JUnitCoreWrapper.java:120)
	at org.apache.maven.surefire.junitcore.JUnitCoreWrapper.executeEager(JUnitCoreWrapper.java:95)
	at org.apache.maven.surefire.junitcore.JUnitCoreWrapper.execute(JUnitCoreWrapper.java:75)
	at org.apache.maven.surefire.junitcore.JUnitCoreWrapper.execute(JUnitCoreWrapper.java:69)
	at org.apache.maven.surefire.junitcore.JUnitCoreProvider.invoke(JUnitCoreProvider.java:146)
	at org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:385)
	at org.apache.maven.surefire.booter.ForkedBooter.execute(ForkedBooter.java:162)
	at org.apache.maven.surefire.booter.ForkedBooter.run(ForkedBooter.java:507)
	at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:495)