consolidate the logs of python script into container logs

Signed-off-by: Harshad Reddy Nalla <hnalla@redhat.com>

runtimes/datascience/ubi8-python-3.8/utils/bootstrapper.py

@@ -472,32 +472,43 @@ def execute(self) -> None:
         """Execute the Python script and upload results to object storage"""
         python_script = os.path.basename(self.filepath)
         python_script_name = python_script.replace(".py", "")
-        python_script_output = f"{python_script_name}.log"
+        # python_script_output = f"{python_script_name}.log"
 
         try:
             OpUtil.log_operation_info(
-                f"executing python script using 'python3 {python_script}' to '{python_script_output}'"
+                f"executing python script using 'python3 {python_script}'"
             )
             t0 = time.time()
 
             run_args = ["python3", python_script]
             if self.parameter_pass_method == "env":
                 self.set_parameters_in_env()
-
-            with open(python_script_output, "w") as log_file:
-                subprocess.run(run_args, stdout=log_file, stderr=subprocess.STDOUT, check=True)
-
+
+            logger.info("----------------------Python logs start----------------------")
+            # Removing support for the s3 storage of python script logs
+            # with open(python_script_output, "w") as log_file:
+            #     process = subprocess.Popen(run_args, stdout=subprocess.PIPE, stderr=subprocess.STDOUT)
+            process = subprocess.Popen(run_args, stdout=subprocess.PIPE, stderr=subprocess.STDOUT)
+
+            for line in iter(process.stdout.readline, b''):
+                sys.stdout.write(line.decode())
+
+            process.stdout.close()
+            return_code = process.wait()
+            logger.info("----------------------Python logs ends----------------------")
+            if return_code:
+                raise subprocess.CalledProcessError(return_code, run_args)
             duration = time.time() - t0
             OpUtil.log_operation_info("python script execution completed", duration)
 
-            self.put_file_to_object_storage(python_script_output, python_script_output)
+            # self.put_file_to_object_storage(python_script_output, python_script_output)
             self.process_outputs()
         except Exception as ex:
             # log in case of errors
             logger.error(f"Unexpected error: {sys.exc_info()[0]}")
             logger.error(f"Error details: {ex}")
 
-            self.put_file_to_object_storage(python_script_output, python_script_output)
+            # self.put_file_to_object_storage(python_script_output, python_script_output)
             raise ex
 
 
@@ -508,30 +519,42 @@ def execute(self) -> None:
         """Execute the R script and upload results to object storage"""
         r_script = os.path.basename(self.filepath)
         r_script_name = r_script.replace(".r", "")
-        r_script_output = f"{r_script_name}.log"
+        # r_script_output = f"{r_script_name}.log"
 
         try:
-            OpUtil.log_operation_info(f"executing R script using 'Rscript {r_script}' to '{r_script_output}'")
+            OpUtil.log_operation_info(f"executing R script using 'Rscript {r_script}'")
             t0 = time.time()
 
             run_args = ["Rscript", r_script]
             if self.parameter_pass_method == "env":
                 self.set_parameters_in_env()
 
-            with open(r_script_output, "w") as log_file:
-                subprocess.run(run_args, stdout=log_file, stderr=subprocess.STDOUT, check=True)
+            logger.info("----------------------R script logs start----------------------")
+            # Removing support for the s3 storage of R script logs
+            # with open(r_script_output, "w") as log_file:
+            #     process = subprocess.Popen(run_args, stdout=subprocess.PIPE, stderr=subprocess.STDOUT)
+            process = subprocess.Popen(run_args, stdout=subprocess.PIPE, stderr=subprocess.STDOUT)
+
+            for line in iter(process.stdout.readline, b''):
+                sys.stdout.write(line.decode())
+
+            process.stdout.close()
+            return_code = process.wait()
+            logger.info("----------------------R script logs ends----------------------")
+            if return_code:
+                raise subprocess.CalledProcessError(return_code, run_args)
 
             duration = time.time() - t0
             OpUtil.log_operation_info("R script execution completed", duration)
 
-            self.put_file_to_object_storage(r_script_output, r_script_output)
+            # self.put_file_to_object_storage(r_script_output, r_script_output)
             self.process_outputs()
         except Exception as ex:
             # log in case of errors
             logger.error(f"Unexpected error: {sys.exc_info()[0]}")
             logger.error(f"Error details: {ex}")
 
-            self.put_file_to_object_storage(r_script_output, r_script_output)
+            # self.put_file_to_object_storage(r_script_output, r_script_output)
             raise ex
 
 
@@ -727,6 +750,7 @@ def main():
     input_params = OpUtil.parse_arguments(sys.argv[1:])
     OpUtil.log_operation_info("starting operation")
     t0 = time.time()
+    OpUtil.package_install(user_volume_path=input_params.get("user-volume-path"))
 
     # Create the appropriate instance, process dependencies and execute the operation
     file_op = FileOpBase.get_instance(**input_params)

runtimes/datascience/ubi9-python-3.9/utils/bootstrapper.py

@@ -472,32 +472,43 @@ def execute(self) -> None:
         """Execute the Python script and upload results to object storage"""
         python_script = os.path.basename(self.filepath)
         python_script_name = python_script.replace(".py", "")
-        python_script_output = f"{python_script_name}.log"
+        # python_script_output = f"{python_script_name}.log"
 
         try:
             OpUtil.log_operation_info(
-                f"executing python script using 'python3 {python_script}' to '{python_script_output}'"
+                f"executing python script using 'python3 {python_script}'"
             )
             t0 = time.time()
 
             run_args = ["python3", python_script]
             if self.parameter_pass_method == "env":
                 self.set_parameters_in_env()
-
-            with open(python_script_output, "w") as log_file:
-                subprocess.run(run_args, stdout=log_file, stderr=subprocess.STDOUT, check=True)
-
+
+            logger.info("----------------------Python logs start----------------------")
+            # Removing support for the s3 storage of python script logs
+            # with open(python_script_output, "w") as log_file:
+            #     process = subprocess.Popen(run_args, stdout=subprocess.PIPE, stderr=subprocess.STDOUT)
+            process = subprocess.Popen(run_args, stdout=subprocess.PIPE, stderr=subprocess.STDOUT)
+
+            for line in iter(process.stdout.readline, b''):
+                sys.stdout.write(line.decode())
+
+            process.stdout.close()
+            return_code = process.wait()
+            logger.info("----------------------Python logs ends----------------------")
+            if return_code:
+                raise subprocess.CalledProcessError(return_code, run_args)
             duration = time.time() - t0
             OpUtil.log_operation_info("python script execution completed", duration)
 
-            self.put_file_to_object_storage(python_script_output, python_script_output)
+            # self.put_file_to_object_storage(python_script_output, python_script_output)
             self.process_outputs()
         except Exception as ex:
             # log in case of errors
             logger.error(f"Unexpected error: {sys.exc_info()[0]}")
             logger.error(f"Error details: {ex}")
 
-            self.put_file_to_object_storage(python_script_output, python_script_output)
+            # self.put_file_to_object_storage(python_script_output, python_script_output)
             raise ex
 
 
@@ -508,30 +519,42 @@ def execute(self) -> None:
         """Execute the R script and upload results to object storage"""
         r_script = os.path.basename(self.filepath)
         r_script_name = r_script.replace(".r", "")
-        r_script_output = f"{r_script_name}.log"
+        # r_script_output = f"{r_script_name}.log"
 
         try:
-            OpUtil.log_operation_info(f"executing R script using 'Rscript {r_script}' to '{r_script_output}'")
+            OpUtil.log_operation_info(f"executing R script using 'Rscript {r_script}'")
             t0 = time.time()
 
             run_args = ["Rscript", r_script]
             if self.parameter_pass_method == "env":
                 self.set_parameters_in_env()
 
-            with open(r_script_output, "w") as log_file:
-                subprocess.run(run_args, stdout=log_file, stderr=subprocess.STDOUT, check=True)
+            logger.info("----------------------R script logs start----------------------")
+            # Removing support for the s3 storage of R script logs
+            # with open(r_script_output, "w") as log_file:
+            #     process = subprocess.Popen(run_args, stdout=subprocess.PIPE, stderr=subprocess.STDOUT)
+            process = subprocess.Popen(run_args, stdout=subprocess.PIPE, stderr=subprocess.STDOUT)
+
+            for line in iter(process.stdout.readline, b''):
+                sys.stdout.write(line.decode())
+
+            process.stdout.close()
+            return_code = process.wait()
+            logger.info("----------------------R script logs ends----------------------")
+            if return_code:
+                raise subprocess.CalledProcessError(return_code, run_args)
 
             duration = time.time() - t0
             OpUtil.log_operation_info("R script execution completed", duration)
 
-            self.put_file_to_object_storage(r_script_output, r_script_output)
+            # self.put_file_to_object_storage(r_script_output, r_script_output)
             self.process_outputs()
         except Exception as ex:
             # log in case of errors
             logger.error(f"Unexpected error: {sys.exc_info()[0]}")
             logger.error(f"Error details: {ex}")
 
-            self.put_file_to_object_storage(r_script_output, r_script_output)
+            # self.put_file_to_object_storage(r_script_output, r_script_output)
             raise ex
 
 
@@ -727,6 +750,7 @@ def main():
     input_params = OpUtil.parse_arguments(sys.argv[1:])
     OpUtil.log_operation_info("starting operation")
     t0 = time.time()
+    OpUtil.package_install(user_volume_path=input_params.get("user-volume-path"))
 
     # Create the appropriate instance, process dependencies and execute the operation
     file_op = FileOpBase.get_instance(**input_params)

runtimes/minimal/ubi8-python-3.8/utils/bootstrapper.py

@@ -472,32 +472,43 @@ def execute(self) -> None:
         """Execute the Python script and upload results to object storage"""
         python_script = os.path.basename(self.filepath)
         python_script_name = python_script.replace(".py", "")
-        python_script_output = f"{python_script_name}.log"
+        # python_script_output = f"{python_script_name}.log"
 
         try:
             OpUtil.log_operation_info(
-                f"executing python script using 'python3 {python_script}' to '{python_script_output}'"
+                f"executing python script using 'python3 {python_script}'"
             )
             t0 = time.time()
 
             run_args = ["python3", python_script]
             if self.parameter_pass_method == "env":
                 self.set_parameters_in_env()
-
-            with open(python_script_output, "w") as log_file:
-                subprocess.run(run_args, stdout=log_file, stderr=subprocess.STDOUT, check=True)
-
+
+            logger.info("----------------------Python logs start----------------------")
+            # Removing support for the s3 storage of python script logs
+            # with open(python_script_output, "w") as log_file:
+            #     process = subprocess.Popen(run_args, stdout=subprocess.PIPE, stderr=subprocess.STDOUT)
+            process = subprocess.Popen(run_args, stdout=subprocess.PIPE, stderr=subprocess.STDOUT)
+
+            for line in iter(process.stdout.readline, b''):
+                sys.stdout.write(line.decode())
+
+            process.stdout.close()
+            return_code = process.wait()
+            logger.info("----------------------Python logs ends----------------------")
+            if return_code:
+                raise subprocess.CalledProcessError(return_code, run_args)
             duration = time.time() - t0
             OpUtil.log_operation_info("python script execution completed", duration)
 
-            self.put_file_to_object_storage(python_script_output, python_script_output)
+            # self.put_file_to_object_storage(python_script_output, python_script_output)
             self.process_outputs()
         except Exception as ex:
             # log in case of errors
             logger.error(f"Unexpected error: {sys.exc_info()[0]}")
             logger.error(f"Error details: {ex}")
 
-            self.put_file_to_object_storage(python_script_output, python_script_output)
+            # self.put_file_to_object_storage(python_script_output, python_script_output)
             raise ex
 
 
@@ -508,30 +519,42 @@ def execute(self) -> None:
         """Execute the R script and upload results to object storage"""
         r_script = os.path.basename(self.filepath)
         r_script_name = r_script.replace(".r", "")
-        r_script_output = f"{r_script_name}.log"
+        # r_script_output = f"{r_script_name}.log"
 
         try:
-            OpUtil.log_operation_info(f"executing R script using 'Rscript {r_script}' to '{r_script_output}'")
+            OpUtil.log_operation_info(f"executing R script using 'Rscript {r_script}'")
             t0 = time.time()
 
             run_args = ["Rscript", r_script]
             if self.parameter_pass_method == "env":
                 self.set_parameters_in_env()
 
-            with open(r_script_output, "w") as log_file:
-                subprocess.run(run_args, stdout=log_file, stderr=subprocess.STDOUT, check=True)
+            logger.info("----------------------R script logs start----------------------")
+            # Removing support for the s3 storage of R script logs
+            # with open(r_script_output, "w") as log_file:
+            #     process = subprocess.Popen(run_args, stdout=subprocess.PIPE, stderr=subprocess.STDOUT)
+            process = subprocess.Popen(run_args, stdout=subprocess.PIPE, stderr=subprocess.STDOUT)
+
+            for line in iter(process.stdout.readline, b''):
+                sys.stdout.write(line.decode())
+
+            process.stdout.close()
+            return_code = process.wait()
+            logger.info("----------------------R script logs ends----------------------")
+            if return_code:
+                raise subprocess.CalledProcessError(return_code, run_args)
 
             duration = time.time() - t0
             OpUtil.log_operation_info("R script execution completed", duration)
 
-            self.put_file_to_object_storage(r_script_output, r_script_output)
+            # self.put_file_to_object_storage(r_script_output, r_script_output)
             self.process_outputs()
         except Exception as ex:
             # log in case of errors
             logger.error(f"Unexpected error: {sys.exc_info()[0]}")
             logger.error(f"Error details: {ex}")
 
-            self.put_file_to_object_storage(r_script_output, r_script_output)
+            # self.put_file_to_object_storage(r_script_output, r_script_output)
             raise ex
 
 
@@ -727,6 +750,7 @@ def main():
     input_params = OpUtil.parse_arguments(sys.argv[1:])
     OpUtil.log_operation_info("starting operation")
     t0 = time.time()
+    OpUtil.package_install(user_volume_path=input_params.get("user-volume-path"))
 
     # Create the appropriate instance, process dependencies and execute the operation
     file_op = FileOpBase.get_instance(**input_params)