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read2 -O "is a folder, not a file, quit now" #50
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I've got the same problem here. The fastp version is 0.12.6. |
I am doing the tests, wait for 10 minutes. |
Reproduced, seems like a bug on some Linux systems. I will fix it in 10 minutes. |
That's caused by a bug of C system API, which acts differently on different Linux systems. I just fixed it, could you please try the latest v0.13.1 ? BTW, what are your systems? |
Thanks! Seems to be working now. I am running Ubuntu 16.04.4 LTS. |
Hi all,
Trying to run fastp on a PE150 sample.
Here is the exact line I'm running:
fastp -i Emx1_1_11_CTRL_USPD16084012-4_HHG33BBXX_L6_1.fq.gz -I Emx1_1_11_CTRL_USPD16084012-4_HHG33BBXX_L6_2.fq.gz -o r1.fq.gz -O r2.fq.gz
Here is the error I get:
ERROR: 'r2.fq.gz' is a folder, not a file, quit now
I have no problems running fastp on either of these fastq files in single-end mode. Also tried using --out2 instead of -O, I get the same result.
Any idea how I can get this to run?
Best,
David
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