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[REVIEW]: Carnival: JVM Property graph data unification toolkit #5117
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Review checklist for @KonradHoeffnerConflict of interest
Code of Conduct
General checks
Functionality
Documentation
Software paper
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Review checklist for @kinowConflict of interest
Code of Conduct
General checks
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Documentation
Software paper
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I've partially finished my review. I created issues in the Carnival source code repository, linking to this issue. I marked the items I've completed in my review as done, in my checklist ☝️ All the pending items are being mentioned in the issues I created. @hjwilli feel free to ping me on any of those issues to discuss or suggest some fixes 👍 As we progress with those issues, I'll update my checklist and hopefully my review should be completed as soon as the issues are resolved. Thanks! |
Thanks @kinow, the team has started working on the issues you've raised and you should see some updates soon! |
The code has 13 commits by Hayden Freedman, who is not on the author list. On the other hand the author list includes Louis Lee, who does not seem to be a contributor to the codebase. Finally Christian Stoeckert only has a single commit where one word in the readme seems to have changed. Can you explain the choice of authors? |
@hjwilli could you comment on the concern raised by @KonradHoeffner at #5117 (comment)? |
Hello @hjwilli - can you give us a progress update in this thread? Thanks very much - |
Hi @majensen, thank you for your patience. My team is still in the process of making updates to the paper and codebase based on feedback and hopes to address most of the issues in the next few weeks. For the author list, Christian Stoeckert is an ontology expert who has been key collaborator in the development of Carnival for the lifetime of the project and has directly contributed to the paper and should be included as an author. Louis Lee is a newer member of the team who has participated software design process for carnival and the paper and has make significant contributions to the demo application for this submission and should be included as an author. Hayden is no longer an active member of the group but has make significant contributions to the codebase and we are reaching out to them for inclusion. |
@hjwilli: Yes, please definitely do include Hayden then, as required by the ethics guidelines:
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@hjwilli - how are your responses coming along? |
@editorialbot generate pdf |
Status reportI have two leftover open issues in their repository: |
@hjwilli - it has been a while - have you been able to address @KonradHoeffner 's issue in this comment? Thanks |
Just noticed that this issue is still open, is the review still active? Is there anything I can do? |
@KonradHoeffner sorry, coming back to this. @hjwilli are you still actively working? Please let us know here. If we don't hear back by end of next week, then I will put the review on pause. |
Hello @KonradHoeffner and @majensen, thank you for your patience. This is still an active project, we will work on addressing @KonradHoeffner and @kinow remaining issues in the next few weeks. |
Thanks for the update @hjwilli, standing by. |
@hjwilli - how are your revisions coming along? Looking forward to hearing back. Thanks! |
@hjwilli looking forward to your revisions. Thanks! |
@hjwilli I will put the "paused" tag on this submission. Please let me know here when you want to restart the review. Thanks |
👋 @majensen - we have hit the 1 month evaluation period for this paused submission. Could you see if this is something that needs to be withdrawn and resubmitted when ready at this point? Thanks so much! |
@hjwilli - since is has been about 5 months since hearing from you in this thread, and we have been paused for one month, I will need to withdraw the paper from current consideration by next Friday. I will be happy to unpause and continue the review if you get back to us before then. Should we proceed to withdraw, you are welcome to resubmit the paper when you are ready. Thanks for your understanding; I am happy to answer any questions. |
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👋 @majensen, please take a look at the state of the submission (this is an automated reminder). |
Hi @majensen, thank you for your follow up with this. I would like to request a continuation of the review so we can address the last few outstanding issues this month. Thank you. |
Ok @hjwilli, I will remove the paused tag and look forward to your updates. |
@majensen - please check in on this one regularly to get it across the finish line. Thank you! |
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Reminder set for @majensen in 5 days |
@hjwilli has addressed my last point about reproducibility, and also updated the text in a part where it mentioned reasoning (that statement was deleted). Found on possible typo in a commit text (an extra "with" in the text), so left a note there for @hjwilli . Otherwise, looks good! @majensen , I have finished my review. Thank you. |
Hi @crvernon, I've made changes to address the open issues raised by @kinow (carnival-data/carnival#105), and one of the issues by @KonradHoeffner (carnival-data/carnival#122). These should now be resolved. Working through addressing carnival-data/carnival#123. |
👋 @majensen, please take a look at the state of the submission (this is an automated reminder). |
Thanks @hjwilli - can you give me a ping here when you are ready? |
Submitting author: @hjwilli (Heather Williams)
Repository: https://github.com/carnival-data/carnival
Branch with paper.md (empty if default branch): joss2
Version: V2.1.5
Editor: @majensen
Reviewers: @kinow, @KonradHoeffner
Archive: Pending
Status
Status badge code:
Reviewers and authors:
Please avoid lengthy details of difficulties in the review thread. Instead, please create a new issue in the target repository and link to those issues (especially acceptance-blockers) by leaving comments in the review thread below. (For completists: if the target issue tracker is also on GitHub, linking the review thread in the issue or vice versa will create corresponding breadcrumb trails in the link target.)
Reviewer instructions & questions
@kinow & @KonradHoeffner, your review will be checklist based. Each of you will have a separate checklist that you should update when carrying out your review.
First of all you need to run this command in a separate comment to create the checklist:
The reviewer guidelines are available here: https://joss.readthedocs.io/en/latest/reviewer_guidelines.html. Any questions/concerns please let @majensen know.
✨ Please start on your review when you are able, and be sure to complete your review in the next six weeks, at the very latest ✨
Checklists
📝 Checklist for @KonradHoeffner
📝 Checklist for @kinow
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