@openmicroscopy

Open Microscopy Environment

Software and data format standards for management of microscopy image data. Joint project between international private and public research

Pinned repositories

  1. bioformats

    Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Pub…

    Java 132 153

  2. openmicroscopy

    OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities,…

    Java 104 81

  3. ome-documentation

    Sphinx-based documentation for the Open Microscopy Environment

    Shell 14 35

  4. infrastructure

    A repository containing scripts for managing infrastructure

    Python 6 13

  5. www.openmicroscopy.org

    OME main website

    HTML 17

  • Sphinx-based documentation for the Open Microscopy Environment

    Shell 14 35 Updated Oct 18, 2017
  • Nginx 4 Updated Oct 19, 2017
  • OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities, research establishments and industry in Europe and the USA, OME has over 20 active researchers with strong links to the microscopy community. Funded …

    Java 104 81 Updated Oct 18, 2017
  • Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.

    Java 132 153 Updated Oct 18, 2017
  • OME Project User Guides

    HTML 15 Updated Oct 18, 2017
  • OME main website

    HTML 17 Updated Oct 17, 2017
  • JavaScript 6 Updated Oct 16, 2017
  • Playbooks used by the OME team for deploying production services including OMERO

    Python 6 Updated Oct 16, 2017
  • Test repository for the snoopycrimecop/snoopycrimecop code.

    10 Updated Oct 14, 2017
  • Failing links that are ignored by our sphinx build system.

    Updated Oct 12, 2017
  • OME tools for managing the Git(Hub) workflow

    Python 13 Updated Oct 10, 2017
  • Dockerfile to build an Octave container

    Shell 6 6 Updated Oct 10, 2017
  • OMERO marshalling infrastructure

    Python 2 8 Updated Oct 10, 2017
  • OMERO.web production docker image

    Shell 5 Updated Oct 9, 2017
  • OMERO.server production docker image

    Shell 6 Updated Oct 9, 2017
  • Shell 2 8 Updated Oct 6, 2017
  • C++ 1 Updated Oct 2, 2017
  • Dockerfile to build an ApacheDS container providing an LDAP and optionally a Kerberos service.

    Shell 3 18 Updated Sep 29, 2017
  • A repository for benchmark testing of OME Files

    CMake 5 Updated Sep 29, 2017
  • A repository containing scripts for managing infrastructure

    Python 6 12 Updated Sep 27, 2017
  • Dependencies for testing OME Ansible roles with Molecule

    Python 3 Updated Sep 27, 2017
  • Centos 7 Zeroc Ice Python Builder

    Shell 2 Updated Sep 27, 2017
  • Installs and configures OMERO.server

    Python 4 Updated Sep 26, 2017
  • A simple POM to update Bio-Formats on a Fiji distribution

    Shell 2 Updated Sep 21, 2017
  • Bio-Formats Octave container based on openmicroscopy/octave

    Matlab 3 Updated Sep 20, 2017
  • Examples showing how to consume Bio-Formats with Maven or Gradle

    4 Updated Sep 20, 2017
  • Install upstream PostgreSQL server. Optionally creates users and databases.

    Python 1 5 Updated Sep 20, 2017
  • Ansible role to setup a Python virtualenv using the upstream package

    Python Updated Sep 19, 2017
  • Plugins for OMERO

    Python 1 26 Updated Sep 18, 2017
  • Multi-container OMERO

    Shell 8 Updated Sep 15, 2017