Add tubhiswt fileset to the benchmarking suite

[sbesson]

Adds the OME-TIFF tubhiswt fileset to the performance datasets to be benchmarked.

[sbesson]

@rleigh-codelibre: executing the benchmarking suite, I got

+ /install/bin/metadata-performance-jace 10 /data/tubhiswt-4D/tubhiswt_C0_TP0.ome.tif /data/out/tubhiswt-jace.ome.xml /data/results/tubhiswt-metadata-linux-jace.tsv
loci.formats.FormatException: No TIFF ImageDescription found
terminate called after throwing an instance of 'boost::exception_detail::clone_impl<boost::exception_detail::error_info_injector<boost::lock_error> >'
  what():  boost: mutex lock failed in pthread_mutex_lock: Invalid argument
pass 0: read init...Aborted (core dumped)

The pixeldata JACE and the metadata/pixeldata C++ are all passing as expected. Any thought on what might be wrong here?

[rleigh-codelibre]

I've seen the mutex lock thing locally during program termination. No idea why that happens, but it looks like it's inside the JNI wrappers and hence a bug in either jace itself or in the maven helper stuff. Not something we can easily fix for the benchmarking.

% grep -R "boost.*lock" src/main/jace/jace
src/main/jace/jace/proxy/JValue.h: *     boost::mutex::scoped_lock lock(javaClassMutex);
src/main/jace/jace/proxy/JObject.cpp:   boost::mutex::scoped_lock lock(javaClassMutex);
src/main/jace/jace/proxy/types/JInt.cpp:        boost::mutex::scoped_lock lock(javaClassMutex);
src/main/jace/jace/proxy/types/JByte.cpp:       boost::mutex::scoped_lock lock(javaClassMutex);
src/main/jace/jace/proxy/types/JFloat.cpp:      boost::mutex::scoped_lock lock(javaClassMutex);
src/main/jace/jace/proxy/types/JLong.cpp:       boost::mutex::scoped_lock lock(javaClassMutex);
src/main/jace/jace/proxy/types/JShort.cpp:      boost::mutex::scoped_lock lock(javaClassMutex);
src/main/jace/jace/proxy/types/JDouble.cpp:     boost::mutex::scoped_lock lock(javaClassMutex);
src/main/jace/jace/proxy/types/JChar.cpp:       boost::mutex::scoped_lock lock(javaClassMutex);
src/main/jace/jace/proxy/types/JVoid.cpp:       boost::mutex::scoped_lock lock(javaClassMutex);
src/main/jace/jace/proxy/types/JBoolean.cpp:    boost::mutex::scoped_lock lock(javaClassMutex);
src/main/jace/jace/JArray.h:            boost::mutex::scoped_lock lock(javaClassMutex);
src/main/jace/jace/JClassImpl.cpp:              boost::mutex::scoped_lock lock(*mutex);
src/main/jace/jace/JNIHelper.cpp:       boost::mutex::scoped_lock lock(shutdownMutex);
src/main/jace/jace/JNIHelper.cpp:       boost::mutex::scoped_lock lock(shutdownMutex);
src/main/jace/jace/JNIHelper.cpp:       boost::mutex::scoped_lock lock(shutdownMutex);
src/main/jace/jace/JNIHelper.cpp:       boost::mutex::scoped_lock lock(shutdownMutex);
src/main/jace/jace/JNIHelper.cpp:       boost::mutex::scoped_lock lock(shutdownMutex);
src/main/jace/jace/JNIHelper.cpp:       boost::mutex::scoped_lock lock(shutdownMutex);

The actual error is "No TIFF ImageDescription found" which would indicate a problem with the file being opened?

[sbesson]

Note the last commits here were executed as per https://ci.openmicroscopy.org/job/OME-FILES-performance-win/119/ and on beluga. I can update the IPython notebook with the new data if this makes sense.

[rleigh-codelibre]

Can't we just run this with || true to avoid the abort? We then get the statistics out of it--the error is only at program termination, not when running the tests.

[rleigh-codelibre]

This all looks fine, just one comment about the jace metadata test.

[rleigh-codelibre]

This all looks good, thanks.