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Fix #91
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wlandau committed Apr 17, 2024
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11 changes: 11 additions & 0 deletions inst/bibliography.bib
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Expand Up @@ -93,6 +93,17 @@ @misc{
url = {https://statmodeling.stat.columbia.edu/2017/04/12/bayesian-posteriors-calibrated/}
}


@Article{Modrak2024,
author = {Martin Modr{\'a}k and Angie H. Moon and Shinyoung Kim and Paul B{\"u}rkner and Niko Huurre and Kate\v{r}ina Faltejskov{\'a} and Andrew Gelman and Aki Vehtari},
journal = {Bayesian Analysis},
title = {{S}imulation-{B}ased {C}alibration {C}hecking for {B}ayesian {C}omputation: {T}he {C}hoice of {T}est {Q}uantities {S}hapes {S}ensitivity},
year = {2024},
volume = {forthcoming},
doi = {10.1214/23-BA1404},
url = {https://doi.org/10.1214/23-BA1404},
}

@Manual{
sbc,
title = {SBC: Simulation Based Calibration for rstan/cmdstanr models},
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6 changes: 3 additions & 3 deletions vignettes/sbc.Rmd
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@@ -1,13 +1,13 @@
---
title: "Simulation-based calibration"
title: "Simulation-based calibration checking"
bibliography: '`r system.file("bibliography.bib", package = "brms.mmrm")`'
csl: '`r system.file("asa.csl", package = "brms.mmrm")`'
output:
rmarkdown::html_vignette:
toc: true
number_sections: true
vignette: >
%\VignetteIndexEntry{Simulation-based calibration}
%\VignetteIndexEntry{Simulation-based calibration checking}
%\VignetteEngine{knitr::rmarkdown}
%\VignetteEncoding{UTF-8}
---
Expand All @@ -29,7 +29,7 @@ library(tidyr)

# About

This vignette shows the results of a simulation-based calibration (SBC) study to validate the implementation of the models in `brms.mmrm`. SBC tests the ability of a Bayesian model to recapture the parameters used to simulate prior predictive data. For details on SBC, please read @talts2020 and the [`SBC`](https://hyunjimoon.github.io/SBC/) R package [@sbc]. This particular SBC study uses the [`targets`](https://docs.ropensci.org/targets/) pipeline in the [`sbc`](https://github.com/openpharma/brms.mmrm/tree/main/sbc) subdirectory of the [`brms.mmrm`](https://github.com/openpharma/brms.mmrm) package source code.
This vignette shows the results of a simulation-based calibration (SBC) checking study to validate the implementation of the models in `brms.mmrm`. SBC checking tests the ability of a Bayesian model to recapture the parameters used to simulate prior predictive data. For details on SBC checking, please read @Modrak2024 and the [`SBC`](https://hyunjimoon.github.io/SBC/) R package [@sbc]. This particular SBC checking study uses the [`targets`](https://docs.ropensci.org/targets/) pipeline in the [`sbc`](https://github.com/openpharma/brms.mmrm/tree/main/sbc) subdirectory of the [`brms.mmrm`](https://github.com/openpharma/brms.mmrm) package source code.

# Simple scenario

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