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Updated channel summary
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pgleeson committed Nov 16, 2023
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1 change: 1 addition & 0 deletions .gitignore
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/NeuroML2/*_nrn.py
/NeuroML2/x86_64
/NeuroML2/*.hoc
/NeuroML2/arm64
4 changes: 2 additions & 2 deletions NeuroML2/channel_summary/ChannelInfo.html
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<p style="font-size:80%;font-family:arial"><a href="../SHK_1.channel.nml">SHK_1.channel.nml</a></p>
<p style="font-size:80%;background-color:#CD5C5C;"><b>Ion: k</b></p>
<p style="font-size:80%;font-family:arial">g = gmax * n<sup>4</sup> </p><br/>
<p style="font-size:80%;font-family:arial">...</p><br/>
<p style="font-size:80%;font-family:arial">SHK_1 channel from Johnson and Mailler, BICOB 2015</p><br/>
</td>
<td>
<a href="SHK_1.inf.png"><img alt="SHK_1 steady state" src="SHK_1.inf.png" height="300"/></a>
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<p style="font-size:80%;font-family:arial"><a href="../EGL_19.channel.nml">EGL_19.channel.nml</a></p>
<p style="font-size:80%;background-color:#8FBC8F;"><b>Ion: ca</b></p>
<p style="font-size:80%;font-family:arial">g = gmax * m<sup>2</sup> * h </p><br/>
<p style="font-size:80%;font-family:arial">...</p><br/>
<p style="font-size:80%;font-family:arial">EGL_19 channel from Johnson and Mailler, BICOB 2015</p><br/>
</td>
<td>
<a href="EGL_19.inf.png"><img alt="EGL_19 steady state" src="EGL_19.inf.png" height="300"/></a>
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57 changes: 24 additions & 33 deletions NeuroML2/channel_summary/README.md
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Channel information
===================

<p style="font-family:arial">Channel information at: T = 34.0 degC, E_rev = 40.0 mV, [Ca2+] = 0.001 mM</p>

<table>
<tr>
<td width="120px">
<sup><b>SHK_1</b><br/>
<a href="../SHK_1.channel.nml">SHK_1.channel.nml</a><br/>
<b>Ion: k</b><br/>
<i>g = gmax * n<sup>4</sup> </i><br/>
...</sup>
</td>
<td>
<a href="SHK_1.inf.png"><img alt="SHK_1 steady state" src="SHK_1.inf.png" height="220"/></a>
</td>
<td>
<a href="SHK_1.tau.png"><img alt="SHK_1 time course" src="SHK_1.tau.png" height="220"/></a>
</td>
</tr>
<tr>
<td width="120px">
<sup><b>EGL_19</b><br/>
<a href="../EGL_19.channel.nml">EGL_19.channel.nml</a><br/>
<b>Ion: ca</b><br/>
<i>g = gmax * m<sup>2</sup> * h </i><br/>
...</sup>
</td>
<td>
<a href="EGL_19.inf.png"><img alt="EGL_19 steady state" src="EGL_19.inf.png" height="220"/></a>
</td>
<td>
<a href="EGL_19.tau.png"><img alt="EGL_19 time course" src="EGL_19.tau.png" height="220"/></a>
</td>
</tr>
</table>

<h2>SHK_1</h2>

Ion: <b>k</b> |
Conductance expression: <b>g = gmax * n<sup>4</sup> </b> |
NeuroML2 file: <a href="../SHK_1.channel.nml">SHK_1.channel.nml</a></div>
<details><summary>Notes</summary>SHK_1 channel from Johnson and Mailler, BICOB 2015</details>

<div><a href="SHK_1.inf.png"><img alt="SHK_1 steady state" src="SHK_1.inf.png" width="350" style="padding:10px 35px 10px 0px"/></a>
<a href="SHK_1.tau.png"><img alt="SHK_1 time course" src="SHK_1.tau.png" width="350" style="padding:10px 10px 10px 0px"/></a>
</div>
</div>

<h2>EGL_19</h2>

Ion: <b>ca</b> |
Conductance expression: <b>g = gmax * m<sup>2</sup> * h </b> |
NeuroML2 file: <a href="../EGL_19.channel.nml">EGL_19.channel.nml</a></div>
<details><summary>Notes</summary>EGL_19 channel from Johnson and Mailler, BICOB 2015</details>

<div><a href="EGL_19.inf.png"><img alt="EGL_19 steady state" src="EGL_19.inf.png" width="350" style="padding:10px 35px 10px 0px"/></a>
<a href="EGL_19.tau.png"><img alt="EGL_19 time course" src="EGL_19.tau.png" width="350" style="padding:10px 10px 10px 0px"/></a>
</div>
</div>
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