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    23 repositories

    • SWBWA

      Public
      BWA on Sunway platform
      C
      •
      GNU General Public License v3.0
      •556•0•0•0•Updated Oct 14, 2024Oct 14, 2024

    • RabbitBAM-SORT

      Public
      Efficient BAM file sorting with RabbitBAM I/O library
      C++
      •0•0•0•0•Updated Aug 12, 2024Aug 12, 2024

    • RabbitBAM-QC

      Public
      Efficient QC for BAM files with RabbitBAM I/O library
      C++
      •0•0•0•0•Updated Aug 12, 2024Aug 12, 2024

    • RabbitBAM

      Public
      Ultra-fast I/O framework for BAM files
      C
      •0•2•0•0•Updated Aug 12, 2024Aug 12, 2024

    • RabbitQCPlus

      Public
      A more efficient quality control tool for sequencing data
      C++
      •
      MIT License
      •2•22•1•0•Updated Jul 23, 2024Jul 23, 2024

    • RabbitSketch

      Public
      fast sketch for DNA or normal sequence data (MinHash WeightedMinHash OrderMinHash and hyperloglog)
      C++
      •
      Other
      •1•3•0•0•Updated Jul 13, 2024Jul 13, 2024

    • SWQC

      Public
      An Efficient Sequencing Data Quality Control Tool on Sunway Platform
      C++
      •
      MIT License
      •0•1•0•0•Updated Jul 3, 2024Jul 3, 2024

    • RabbitKSSD

      Public
      RabbitKSSD: accelerating genome distance estimation on modern multi-core architectures
      C++
      •
      Other
      •1•9•0•1•Updated Jun 5, 2024Jun 5, 2024

    • RabbitSAlign

      Public
      GPU Acceleration of Short Read Alignment for Heterogeneous Multicore Platforms
      C++
      •
      MIT License
      •17•3•0•0•Updated Jun 3, 2024Jun 3, 2024

    • RabbitTClust

      Public
      RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches
      sketchhigh-performance-computinggenome-clusteringbioinformatics
      C++
      •
      Other
      •3•42•6•0•Updated May 29, 2024May 29, 2024

    • RabbitTrim

      Public
      C++
      •0•4•0•0•Updated Mar 28, 2024Mar 28, 2024

    • RabbitFX-Casestudy

      Public
      RabbitFX case studies
      C++
      •0•3•0•0•Updated Jan 22, 2024Jan 22, 2024

    • RabbitFX-1

      Public
      new
      C++
      •
      Other
      •2•0•0•0•Updated Apr 6, 2023Apr 6, 2023

    • RabbitFX

      Public
      C++
      •
      Other
      •2•9•0•0•Updated Apr 6, 2023Apr 6, 2023

    • RabbitVar

      Public
      An Fast variant calling tool to detection germline and somatic variants
      Jupyter Notebook
      •
      Other
      •3•0•0•0•Updated Feb 16, 2023Feb 16, 2023

    • RabbitZ

      Public
      Our aim: A streaming gzip decompressing library for biological sequences
      C++
      •
      MIT License
      •0•0•0•0•Updated Aug 18, 2022Aug 18, 2022

    • RabbitUniq

      Public
      compute unique k-mer faster
      C++
      •
      MIT License
      •0•0•1•0•Updated Jun 20, 2022Jun 20, 2022

    • RabbitV

      Public
      RabbitV: fast detection of viruses and microorganisms in sequencing data on multi-core architectures
      C++
      •
      MIT License
      •1•8•0•0•Updated Jun 20, 2022Jun 20, 2022

    • RabbitIO

      Public
      C++
      •
      Other
      •3•0•0•0•Updated Apr 12, 2022Apr 12, 2022

    • RabbitBM

      Public
      Highly optimized version of ST_BarcodeMap.
      C++
      •
      MIT License
      •0•0•0•0•Updated Nov 21, 2021Nov 21, 2021

    • RabbitQC-CCS

      Public
      A quality control toolset for CCS-BAM files
      0•0•0•0•Updated May 24, 2021May 24, 2021

    • RabbitQC

      Public
      RabbitQC: high-speed scalable quality control for sequencing data.
      C++
      •
      GNU General Public License v3.0
      •4•0•0•0•Updated Mar 21, 2021Mar 21, 2021

    • RabbitMash

      Public
      RabbitMash: an efficient highly optimized implementation of Mash.
      C++
      •
      Other
      •4•0•0•0•Updated Sep 4, 2020Sep 4, 2020