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    17 repositories

    • OpenHiCAMM

      Public
      Open High-content acquisition workflow plugin for Micro-Manager
      Java
      •
      GNU Lesser General Public License v2.1
      •1•4•3•2•Updated Jun 6, 2024Jun 6, 2024

    • RiboseQC

      Public
      Pipeline for Quality Control of Ribo-Seq data, selection of P-site offsets, and codon usage statistics.
      R
      •14•0•0•0•Updated Sep 8, 2022Sep 8, 2022

    • MapViewer

      Public
      HTML
      •0•1•0•1•Updated Jun 21, 2022Jun 21, 2022

    • jbrowse-plugin-bdgp-rest-api

      Public
      A JBrowse 2 plugin for accessing the UCSC API
      TypeScript
      •3•1•0•0•Updated Oct 29, 2021Oct 29, 2021

    • detectDesign

      Public
      toolkit for finding likely cas9 off-target binding and effect on gene expression, designing sgRNAs and pairs of sgRNAs with minimal off-target effect on gene-expression
      Python
      •2•0•0•0•Updated Jun 8, 2021Jun 8, 2021

    • Unicycler

      Public
      hybrid assembly pipeline for bacterial genomes
      C++
      •
      GNU General Public License v3.0
      •131•0•0•0•Updated Jan 26, 2021Jan 26, 2021

    • MARS

      Public
      MARS: improving Multiple circular sequence Alignment using Refined Sequences
      C++
      •
      GNU General Public License v3.0
      •9•0•0•0•Updated Aug 10, 2020Aug 10, 2020

    • R-build

      Public
      Compile and install R, based on ruby-build
      Shell
      •
      MIT License
      •780•0•0•0•Updated Jun 23, 2020Jun 23, 2020

    • relocatable-perl

      Public
      self-contained, portable perl binaries
      Perl
      •
      Other
      •8•1•0•0•Updated Jun 2, 2020Jun 2, 2020

    • cassette_reannotation

      Public
      A set of rust tools used in the Conboy paper analysis.
      Rust
      •
      MIT License
      •1•0•0•0•Updated Mar 10, 2020Mar 10, 2020

    • Macfusion

      Public
      Latest Macfusion-NG binary with latest static SSHFS binary already included
      0•2•0•0•Updated Jan 15, 2020Jan 15, 2020

    • spladder

      Public
      Tool for the detection and quantification of alternative splicing events from RNA-Seq data.
      Python
      •
      Other
      •33•0•0•0•Updated Jan 25, 2018Jan 25, 2018

    • grit

      Public
      Python
      •
      GNU General Public License v3.0
      •4•0•0•0•Updated Mar 3, 2017Mar 3, 2017

    • figshare.js

      Public
      Interact with the Figshare API from the CLI or JavaScript
      JavaScript
      •2•1•0•0•Updated Feb 23, 2017Feb 23, 2017

    • staNMF

      Public
      Stability-driven nonnegative matrix factorization (staNMF)
      R
      •
      GNU General Public License v3.0
      •2•3•0•0•Updated Jun 7, 2016Jun 7, 2016

    • nanopore-paper-analysis

      Public
      Code for nanopore paper
      Jupyter Notebook
      •5•0•0•0•Updated May 4, 2016May 4, 2016

    • dictlearn

      Public
      C++
      •0•0•0•0•Updated May 1, 2015May 1, 2015