orlovartem / NoV_recombination Public

Notifications You must be signed in to change notification settings
Fork 1
Star 1

Scripts for "Patterns and temporal dynamics of natural recombination in noroviruses"

1 star 1 fork Branches Tags Activity

Notifications

Name		Name	Last commit message	Last commit date
Latest commit History 3 Commits
data		data
scripts		scripts
.gitattributes		.gitattributes
NoV_PIPELINE.ps1		NoV_PIPELINE.ps1
README.md		README.md

Repository files navigation

Norovirus recombination

This repository contains scripts used in preparing data for the analysis of recombination processes in noroviruses.

Prerequisites

MAFFT v7.450
BLAST+ v2.6.0
trimAl v1.2rev57

Pipeline

parser_gb.py
resolve_ambiguous.py
split_genome.py
trans_alignment.py
trimAl
join_al.py
gap_in_row.py
remove_similar.py

Usage

NoV_PIPELINE.ps1 [-clear]

About

Scripts for "Patterns and temporal dynamics of natural recombination in noroviruses"

Report repository

Releases

No releases published

Packages

No packages published

Languages