Update readme for heat transfer example with new location and build i… #4124
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####################################### | |
# Ideally this would be done in seperate workflows but placing them all | |
# in one is currently necessary to enforce job dependencies | |
####################################### | |
####################################### | |
# Note the use of multiple checkout actions in most jobs. This has been | |
# implemented to allow the use of CI scripts at a different ref or sha than | |
# the source code they're evaluating. For push events (when a pull_request is | |
# merged) there is no difference. However, for pull_request events this allows | |
# us test code at the head of a pull_request using the CI scripts from the | |
# prospectively merged pull_request, which will include any CI updates that | |
# may have made it to the target branch after the pull_request was started. | |
####################################### | |
####################################### | |
# Note regarding restore/save of cache for use by ccache: | |
# | |
# We only save cache on main branch runs. PR workflows only consume the | |
# cache to avoid exceeding the 10 GB limit, which can cause cache thrashing. | |
# Also, we only save the cache if there was *not* an exact match when cache | |
# was restored. This avoids attempting to write to an existing cache key, | |
# which results in failure to save the cache. While failure to save doesn't | |
# cause job failures, it seems a waste and is easily avoidable. | |
####################################### | |
name: GitHub Actions | |
on: | |
push: | |
branches: | |
- master | |
- release* | |
pull_request: | |
branches: | |
- master | |
- release* | |
concurrency: | |
group: ${{ github.head_ref || github.run_id }} | |
cancel-in-progress: true | |
jobs: | |
####################################### | |
# Git checks | |
####################################### | |
git_checks: | |
runs-on: ubuntu-latest | |
outputs: | |
num_code_changes: ${{ steps.get_code_changes.outputs.num_code_changes }} | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 | |
- name: Check for appropriately named topic branch | |
run: | | |
scripts/ci/gh-actions/check-branch-name.sh | |
- name: Check for code changes | |
id: get_code_changes | |
run: | | |
scripts/ci/gh-actions/get-changed-files.sh | |
echo "::group::Test script output files" | |
ls -la *-changed-files.txt | |
NUM_CHANGES=$(wc -l < filtered-changed-files.txt) | |
echo "Number of files changed (filtered): ${NUM_CHANGES}" | |
echo "::set-output name=num_code_changes::${NUM_CHANGES}" | |
####################################### | |
# Formatting jobs | |
####################################### | |
format: | |
needs: git_checks | |
if: needs.git_checks.outputs.num_code_changes > 0 | |
runs-on: ubuntu-latest | |
container: | |
image: ghcr.io/ornladios/adios2:ci-formatting | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
path: gha | |
- uses: actions/checkout@v4 | |
with: | |
ref: ${{ github.event.pull_request.head.sha }} | |
path: source | |
- name: CXX | |
working-directory: source | |
run: ../gha/scripts/ci/scripts/run-clang-format.sh | |
- name: Python | |
working-directory: source | |
run: ../gha/scripts/ci/scripts/run-flake8.sh | |
- name: Shell | |
working-directory: source | |
run: ../gha/scripts/ci/scripts/run-shellcheck.sh | |
####################################### | |
# Build and test jobs | |
####################################### | |
linux_ubuntu: | |
needs: [format, git_checks] | |
if: needs.git_checks.outputs.num_code_changes > 0 | |
runs-on: ubuntu-20.04 | |
container: | |
image: ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-${{ matrix.compiler }} | |
options: --shm-size=1g | |
env: | |
GH_YML_JOBNAME: ${{ matrix.os }}-${{ matrix.compiler }}${{ matrix.shared == 'static' && '-static' || ''}}-${{ matrix.parallel }} | |
GH_YML_BASE_OS: Linux | |
GH_YML_MATRIX_OS: ${{ matrix.os }} | |
GH_YML_MATRIX_COMPILER: ${{ matrix.compiler }} | |
GH_YML_MATRIX_PARALLEL: ${{ matrix.parallel }} | |
CCACHE_BASEDIR: "${GITHUB_WORKSPACE}" | |
CCACHE_DIR: "${GITHUB_WORKSPACE}/.ccache" | |
CCACHE_COMPRESS: true | |
CCACHE_COMPRESSLEVEL: 6 | |
strategy: | |
fail-fast: false | |
matrix: | |
os: [ubuntu20.04] | |
compiler: [gcc8, gcc9, gcc10, gcc11, clang6, clang10] | |
shared: [shared] | |
parallel: [mpich] | |
include: | |
- os: ubuntu20.04 | |
compiler: gcc8 | |
parallel: ompi | |
- os: ubuntu20.04 | |
compiler: gcc8 | |
parallel: serial | |
- os: ubuntu20.04 | |
compiler: clang6 | |
parallel: ompi | |
- os: ubuntu20.04 | |
compiler: clang6 | |
parallel: serial | |
- os: ubuntu20.04 | |
compiler: gcc8 | |
shared: static | |
parallel: ompi | |
constrains: build_only | |
- os: ubuntu20.04 | |
compiler: clang6 | |
shared: static | |
parallel: ompi | |
constrains: build_only | |
- os: ubuntu20.04 | |
compiler: gcc8 | |
shared: static | |
parallel: serial | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
path: gha | |
- uses: actions/checkout@v4 | |
with: | |
ref: ${{ github.event.pull_request.head.sha }} | |
path: source | |
- name: Restore cache | |
uses: actions/cache/restore@v3 | |
id: restore-cache | |
with: | |
path: .ccache | |
key: ccache-${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.parallel }}-${{ github.sha }} | |
restore-keys: | | |
ccache-${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.parallel }} | |
- name: Configure cache | |
run: ccache -z | |
- name: Setup | |
run: gha/scripts/ci/gh-actions/linux-setup.sh | |
- name: Update | |
run: gha/scripts/ci/gh-actions/run.sh update | |
- name: Configure | |
run: gha/scripts/ci/gh-actions/run.sh configure | |
- name: Build | |
run: gha/scripts/ci/gh-actions/run.sh build | |
- name: Print ccache statistics | |
run: ccache -s | |
- name: Save cache | |
uses: actions/cache/save@v3 | |
if: ${{ github.ref_name == 'master' && steps.restore-cache.outputs.cache-hit != 'true' }} | |
id: save-cache | |
with: | |
path: .ccache | |
key: ccache-${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.parallel }}-${{ github.sha }} | |
- name: Test | |
if: ${{ matrix.constrains != 'build_only' }} | |
run: gha/scripts/ci/gh-actions/run.sh test | |
linux_el8: | |
needs: [format, git_checks] | |
if: needs.git_checks.outputs.num_code_changes > 0 | |
runs-on: ubuntu-latest | |
container: | |
image: ghcr.io/ornladios/adios2:ci-el8-${{ matrix.compiler }} | |
options: --shm-size=1g | |
env: | |
GH_YML_JOBNAME: ${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.parallel }} | |
GH_YML_BASE_OS: Linux | |
GH_YML_MATRIX_OS: ${{ matrix.os }} | |
GH_YML_MATRIX_COMPILER: ${{ matrix.compiler }} | |
GH_YML_MATRIX_PARALLEL: ${{ matrix.parallel }} | |
CCACHE_BASEDIR: "${GITHUB_WORKSPACE}" | |
CCACHE_DIR: "${GITHUB_WORKSPACE}/.ccache" | |
CCACHE_COMPRESS: true | |
CCACHE_COMPRESSLEVEL: 6 | |
strategy: | |
fail-fast: false | |
matrix: | |
os: [el8] | |
compiler: [icc, oneapi] | |
parallel: [mpich] | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
path: gha | |
- uses: actions/checkout@v4 | |
with: | |
ref: ${{ github.event.pull_request.head.sha }} | |
path: source | |
- name: Restore cache | |
uses: actions/cache/restore@v3 | |
id: restore-cache | |
with: | |
path: .ccache | |
key: ccache-${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.parallel }}-${{ github.sha }} | |
restore-keys: | | |
ccache-${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.parallel }} | |
- name: Configure cache | |
run: ccache -z | |
- name: Setup | |
run: gha/scripts/ci/gh-actions/linux-setup.sh | |
- name: Update | |
run: gha/scripts/ci/gh-actions/run.sh update | |
- name: Configure | |
run: gha/scripts/ci/gh-actions/run.sh configure | |
- name: Build | |
run: gha/scripts/ci/gh-actions/run.sh build | |
- name: Print ccache statistics | |
run: ccache -s | |
- name: Save cache | |
uses: actions/cache/save@v3 | |
if: ${{ github.ref_name == 'master' && steps.restore-cache.outputs.cache-hit != 'true' }} | |
id: save-cache | |
with: | |
path: .ccache | |
key: ccache-${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.parallel }}-${{ github.sha }} | |
- name: Test | |
run: gha/scripts/ci/gh-actions/run.sh test | |
macos: | |
needs: [format, git_checks] | |
if: needs.git_checks.outputs.num_code_changes > 0 | |
runs-on: ${{ matrix.image }} | |
env: | |
GH_YML_JOBNAME: ${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.parallel }} | |
GH_YML_BASE_OS: macOS | |
GH_YML_MATRIX_OS: ${{ matrix.os }} | |
GH_YML_MATRIX_COMPILER: ${{ matrix.compiler }} | |
GH_YML_MATRIX_PARALLEL: ${{ matrix.parallel }} | |
CCACHE_BASEDIR: "${GITHUB_WORKSPACE}" | |
CCACHE_DIR: "${GITHUB_WORKSPACE}/.ccache" | |
CCACHE_COMPRESS: true | |
CCACHE_COMPRESSLEVEL: 6 | |
strategy: | |
fail-fast: false | |
matrix: | |
os: [macos11, macos12] | |
parallel: [serial] | |
include: | |
- os: macos11 | |
image: macos-11 | |
compiler: xcode13_0 | |
- os: macos12 | |
image: macos-12 | |
compiler: xcode13_4_1 | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
path: gha | |
- uses: actions/checkout@v4 | |
with: | |
ref: ${{ github.event.pull_request.head.sha }} | |
path: source | |
- name: Setup | |
run: gha/scripts/ci/gh-actions/macos-setup.sh | |
- name: Restore cache | |
uses: actions/cache/restore@v3 | |
id: restore-cache | |
with: | |
path: .ccache | |
key: ccache-${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.parallel }}-${{ github.sha }} | |
restore-keys: | | |
ccache-${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.parallel }} | |
- name: Configure cache | |
run: ccache -z | |
- name: Update | |
run: gha/scripts/ci/gh-actions/run.sh update | |
- name: Configure | |
run: gha/scripts/ci/gh-actions/run.sh configure | |
- name: Build | |
run: gha/scripts/ci/gh-actions/run.sh build | |
- name: Print ccache statistics | |
run: ccache -s | |
- name: Save cache | |
uses: actions/cache/save@v3 | |
if: ${{ github.ref_name == 'master' && steps.restore-cache.outputs.cache-hit != 'true' }} | |
id: save-cache | |
with: | |
path: .ccache | |
key: ccache-${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.parallel }}-${{ github.sha }} | |
- name: Test | |
run: gha/scripts/ci/gh-actions/run.sh test | |
windows: | |
needs: [format, git_checks] | |
if: needs.git_checks.outputs.num_code_changes > 0 | |
runs-on: ${{ matrix.image }} | |
env: | |
GH_YML_JOBNAME: ${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.parallel }} | |
GH_YML_BASE_OS: Windows | |
GH_YML_MATRIX_OS: ${{ matrix.os }} | |
GH_YML_MATRIX_COMPILER: ${{ matrix.compiler }} | |
GH_YML_MATRIX_PARALLEL: ${{ matrix.parallel }} | |
strategy: | |
fail-fast: false | |
matrix: | |
os: [win2019, win2022] | |
parallel: [serial, ompi] | |
include: | |
- os: win2019 | |
image: windows-2019 | |
compiler: vs2019 | |
- os: win2022 | |
image: windows-2022 | |
compiler: vs2022 | |
defaults: | |
run: | |
shell: bash | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
path: gha | |
- uses: actions/checkout@v4 | |
with: | |
ref: ${{ github.event.pull_request.head.sha }} | |
path: source | |
- name: Setup | |
shell: pwsh | |
run: gha/scripts/ci/gh-actions/windows-setup.ps1 | |
- name: Update | |
run: gha/scripts/ci/gh-actions/run.sh update | |
- name: Configure | |
run: gha/scripts/ci/gh-actions/run.sh configure | |
- name: Build | |
run: gha/scripts/ci/gh-actions/run.sh build | |
- name: Test | |
run: gha/scripts/ci/gh-actions/run.sh test | |
####################################### | |
# Docker container jobs | |
####################################### | |
docker: | |
needs: [format, git_checks] | |
if: needs.git_checks.outputs.num_code_changes > 0 | |
runs-on: ubuntu-latest | |
strategy: | |
fail-fast: false | |
matrix: | |
baseos: [ubuntu-bionic] | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
ref: ${{ github.event.pull_request.head.sha }} | |
path: ci-source | |
- name: Re-configure docker daemon | |
run: | | |
sudo systemctl stop docker | |
echo $'{\n "experimental": true\n}' | \ | |
sudo tee /etc/docker/daemon.json | |
sudo systemctl start docker | |
- name: Build image | |
run: | | |
docker build \ | |
--rm --squash \ | |
-t ornladios/adios2:ci-tmp \ | |
--build-arg baseos=${{ matrix.baseos }} \ | |
--build-arg ci_source_dir=ci-source \ | |
-f ci-source/scripts/ci/images/spack/Dockerfile \ | |
. | |
- name: Save image as a tar file | |
run: | | |
docker save -o ci-docker.tar ornladios/adios2:ci-tmp | |
ls -lah ci-docker.tar | |
- name: Upload | |
uses: actions/upload-artifact@v2 | |
with: | |
retention-days: 1 | |
name: ci-docker ${{ matrix.baseos }} ${{ github.sha }} | |
path: ci-docker.tar | |
- name: Push image to Docker Hub | |
if: github.event_name == 'push' | |
env: | |
DOCKERHUB_USERNAME: ${{ secrets.DOCKERHUB_USERNAME }} | |
DOCKERHUB_PASSWORD: ${{ secrets.DOCKERHUB_PASSWORD }} | |
run: | | |
target_tag="${GITHUB_REF##refs/heads/}-${{ matrix.baseos }}" | |
docker tag \ | |
ornladios/adios2:ci-tmp \ | |
ornladios/adios2:${target_tag} | |
docker login \ | |
--username="${DOCKERHUB_USERNAME}" \ | |
--password="${DOCKERHUB_PASSWORD}" | |
docker push \ | |
ornladios/adios2:${target_tag} | |
####################################### | |
# Contract testing jobs | |
####################################### | |
# These contract testing jobs use the container built in the previous | |
# docker job and runs it in a way similar to how a typical GitHub | |
# Actions container job does. Using the "messy" default shell for | |
# run steps lets the steps be written as though they too were using a | |
# standard container job. | |
contract: | |
needs: [format, git_checks, docker] | |
if: needs.git_checks.outputs.num_code_changes > 0 | |
runs-on: ubuntu-latest | |
strategy: | |
fail-fast: false | |
matrix: | |
code: [examples, lammps, tau] | |
include: | |
- code: examples | |
- code: lammps | |
repo: pnorbert/lammps | |
ref: fix-deprecated-adios-init | |
- code: tau | |
defaults: | |
run: | |
shell: bash -c "docker exec adios2-ci bash --login -e $(echo {0} | sed 's|/home/runner/work|/__w|g')" | |
steps: | |
- uses: actions/checkout@v4 | |
if: ${{ matrix.repo != '' }} | |
with: | |
repository: ${{ matrix.repo }} | |
ref: ${{ matrix.ref }} | |
path: source | |
- name: Download CI docker image | |
uses: actions/download-artifact@v2 | |
with: | |
name: ci-docker ubuntu-bionic ${{ github.sha }} | |
- name: Initialize containers | |
shell: bash -e {0} | |
run: | | |
sudo chown 1000:1000 . | |
docker load -i ci-docker.tar | |
docker create \ | |
--name adios2-ci --workdir /__w/ADIOS2/ADIOS2 \ | |
-v "/home/runner/work":"/__w" \ | |
--entrypoint "tail" ornladios/adios2:ci-tmp \ | |
"-f" "/dev/null" | |
docker start adios2-ci | |
- name: Dependencies | |
run: /opt/adios2/source/testing/contract/${{ matrix.code }}/depends.sh | |
- name: Configure | |
run: /opt/adios2/source/testing/contract/${{ matrix.code }}/config.sh | |
- name: Build | |
run: /opt/adios2/source/testing/contract/${{ matrix.code }}/build.sh | |
- name: Install | |
run: /opt/adios2/source/testing/contract/${{ matrix.code }}/install.sh | |
- name: Test | |
run: /opt/adios2/source/testing/contract/${{ matrix.code }}/test.sh | |
####################################### | |
# Code analysis builds | |
####################################### | |
analyze: | |
needs: [format, git_checks] | |
name: CodeQL | |
runs-on: ubuntu-latest | |
container: | |
image: 'ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-gcc8' | |
env: | |
GH_YML_JOBNAME: ubuntu20.04-gcc8-serial-codeql | |
GH_YML_BASE_OS: Linux | |
GH_YML_MATRIX_OS: ubuntu20.04 | |
GH_YML_MATRIX_COMPILER: gcc8 | |
GH_YML_MATRIX_PARALLEL: serial | |
permissions: | |
actions: read | |
contents: read | |
security-events: write | |
strategy: | |
fail-fast: false | |
matrix: | |
language: [ 'cpp' ] | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
path: gha | |
- uses: actions/checkout@v4 | |
with: | |
ref: ${{ github.event.pull_request.head.sha }} | |
path: source | |
- name: Initialize CodeQL | |
uses: github/codeql-action/init@v2 | |
with: | |
languages: ${{ matrix.language }} | |
config: | | |
paths: | |
- source | |
paths-ignore: | |
- source/thirdparty | |
- name: Setup | |
run: gha/scripts/ci/gh-actions/linux-setup.sh | |
- name: Update | |
run: gha/scripts/ci/gh-actions/run.sh update | |
- name: Configure | |
run: gha/scripts/ci/gh-actions/run.sh configure | |
- name: Build | |
run: gha/scripts/ci/gh-actions/run.sh build | |
- name: Perform CodeQL Analysis | |
uses: github/codeql-action/analyze@v2 | |
with: | |
category: "/language:${{matrix.language}}" | |
####################################### | |
# Workaround for skipping matrix jobs | |
####################################### | |
build_and_test: | |
needs: [linux_el8, linux_ubuntu, macos, docker, contract] | |
runs-on: ubuntu-latest | |
steps: | |
- run: echo "All required jobs complete" |