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A refinement of the rRNA detection is necessary as currently too many truncated and false positive sequences are predicted.
Inspired by Barrnap and certain issues (tseemann/prokka#423, tseemann/barrnap#39), the cmsearch based approach (cmsearch --noali --cut_tc --notrunc) therefore gets replaced by a cmscan approach in glocal mode (cmscan --noali --cut_tc -g --nohmmonly --rfam)
The text was updated successfully, but these errors were encountered:
A refinement of the
rRNA
detection is necessary as currently too many truncated and false positive sequences are predicted.Inspired by Barrnap and certain issues (tseemann/prokka#423, tseemann/barrnap#39), the
cmsearch
based approach (cmsearch --noali --cut_tc --notrunc
) therefore gets replaced by a cmscan approach inglocal
mode (cmscan --noali --cut_tc -g --nohmmonly --rfam
)The text was updated successfully, but these errors were encountered: