Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

refine rRNA detection #18

Closed
oschwengers opened this issue Sep 10, 2020 · 0 comments
Closed

refine rRNA detection #18

oschwengers opened this issue Sep 10, 2020 · 0 comments
Milestone

Comments

@oschwengers
Copy link
Owner

A refinement of the rRNA detection is necessary as currently too many truncated and false positive sequences are predicted.

Inspired by Barrnap and certain issues (tseemann/prokka#423, tseemann/barrnap#39), the cmsearch based approach (cmsearch --noali --cut_tc --notrunc) therefore gets replaced by a cmscan approach in glocal mode (cmscan --noali --cut_tc -g --nohmmonly --rfam)

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant