Can i use "-noanno" options to accelerate the whole process?

[AntetokounmJie]

Hi, shujun

I have finish a LAI process today.
And i find there is a "Use -noanno if you don't want whole-genome LTR-RT annotation" message in log file.
So i wanna know that can i use this option to do LAI analysis?
Or this option is neccessary for LAI analysis?

Best regards

[oushujun]

Hello, LAI needs whole-genome LTR annotation so if you use -noanno, there won't be LAI results at the end. But you can always run LAI independently given required inputs. Best, Shujun

…

On Fri, Aug 14, 2020 at 11:14 PM Zea1nfO ***@***.***> wrote: Hi, shujun I have finish a LAI process today. And i find there is a "Use -noanno if you don't want whole-genome LTR-RT annotation" message in log file. So i wanna know that can i use this option to do LAI analysis? Or this option is neccessary for LAI analysis? Best regards — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#80>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ABNX4NA3USU4AX74KAA3IWLSAYDSBANCNFSM4QACD6TQ> .

[AntetokounmJie]

@oushujun
Thanks a lot.
I got it.
Best regards.
:)