New features
- Use the same LTR name for parts of INT and LTR from the same element in preparation for solving @edta#251
- Add the yml file for conda installation
Bug fix
Update get_range.pl
- A bug introduced in Aug, 2023 (# a375c5e) that will output all candidates (both LTR retrotransposons and not LTR repeats) for generating the library file. You will see non-LTR sequences in the library due to this bug (eg., LTR/EnSpm-CACTA). Now it's fixed.
- A bug introduced in May, 2023 (#058ce29) that fails to remove masked sequences in the final library. Now it's fixed.
- Remove the RepeatMasker support to simplify the code since this functionality is never used in the official release.
Contributors
edta