Another test for pull #177

owlcollab · Mar 11, 2017 · 46ba478 · 46ba478
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diff --git a/OWLTools-Core/src/test/java/owltools/graph/OWLGraphWrapperEdgesAdvancedTest.java b/OWLTools-Core/src/test/java/owltools/graph/OWLGraphWrapperEdgesAdvancedTest.java
@@ -135,5 +135,20 @@ public void testGetNeighbors() throws Exception {
 		assertTrue(neighbors.hasEdge(new OWLShuntEdge("GO:1904238", "CL:0000669", "results_in_acquisition_of_features_of")));
 		assertTrue(neighbors.hasEdge(new OWLShuntEdge("GO:1904238", "GO:0030154", "is_a")));
 	}
+
+	// see https://github.com/owlcollab/owltools/pull/177
+	@Test
+	public void testPull177() throws Exception {
+	    OWLGraphWrapper graph = getGraph("graph/detection-of-stimulus.obo");
+
+	    OWLClass cls = graph.getOWLClassByIdentifier("GO:1902401");
+	    assertNotNull(cls);
+	    OWLShuntGraph neighbors = graph.getNeighbors(cls);
+	    assertEquals(3, neighbors.nodes.size());
+	    assertEquals(2, neighbors.edges.size());
+	    assertTrue(neighbors.hasEdge(new OWLShuntEdge("GO:1902401", "GO:0044773", "part_of")));
+        assertTrue(neighbors.hasEdge(new OWLShuntEdge("GO:1902401", "GO:0072400", "is_a")));
+        assertFalse(neighbors.hasEdge(new OWLShuntEdge("GO:1902401", "GO:0051606", "is_a")));
+	}
 
 }
diff --git a/OWLTools-Core/src/test/resources/graph/detection-of-stimulus.obo b/OWLTools-Core/src/test/resources/graph/detection-of-stimulus.obo
@@ -0,0 +1,19 @@
+ontology: test
+
+[Term]
+id: GO:1902401
+name: detection of stimulus involved in mitotic DNA damage checkpoint
+namespace: biological_process
+def: "Any detection of stimulus that is involved in mitotic DNA damage checkpoint." [GOC:mtg_cell_cycle, GOC:TermGenie]
+synonym: "perception of stimulus involved in mitotic DNA damage checkpoint" RELATED [GOC:TermGenie]
+synonym: "stimulus detection involved in mitotic DNA damage checkpoint" EXACT [GOC:TermGenie]
+synonym: "stimulus sensing involved in mitotic DNA damage checkpoint" RELATED [GOC:TermGenie]
+is_a: GO:0072400 ! detection of stimulus involved in mitotic DNA integrity checkpoint
+intersection_of: GO:0051606 ! detection of stimulus
+intersection_of: part_of GO:0044773 ! mitotic DNA damage checkpoint
+created_by: jl
+creation_date: 2013-09-12T12:07:12Z
+
+[Typedef]
+id: part_of
+xref: BFO:0000050