Fix pdb structure in test 1 and motif position indentation

gget/gget_elm.py

@@ -200,17 +200,15 @@ def elm(
                 value = value.strip().replace("\n", " ").replace("\t", " ")
             df_2.loc[elm_id, column_ignored_colon] = value
 
-            if not uniprot:
-                # Get motifs associated with each elm id in original sequence
-                start = df.iloc[elm_id_index]['start']
-                stop = df.iloc[elm_id_index]['stop']
-                print(type(start))
-                print(type(stop))
-                if isinstance(start, int) & isinstance(stop, int):
-                    df_2.loc[elm_id, 'Motif in original sequence'] = sequence[start-1: stop]
-                    print(sequence[start-1: stop])
-                else:
-                    df_2.loc[elm_id, 'Motif in original sequence'] = np.nan
+        if not uniprot:
+            # Get motifs associated with each elm id in original sequence
+            start = df.iloc[elm_id_index]['start']
+            stop = df.iloc[elm_id_index]['stop']
+            if isinstance(start, int) & isinstance(stop, int):
+                df_2.loc[elm_id, 'Motif in original sequence'] = sequence[start-1: stop]
+                print(sequence[start-1: stop])
+            else:
+                df_2.loc[elm_id, 'Motif in original sequence'] = np.nan
 
     # if a motif is found more than once in a UniProt ID or sequence, df_2 will have duplicate rows
     df_2 = df_2.drop_duplicates()